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Information for unigene UN59828
| FASTA Sequence |
| Unigene ID: UN59828 | Length: 692 |
SSR | | GGGTGCATTTTCTTGTTCGTTGACCAGATAACAAAAAAAAAAGGCATCGAAGATGAATGTTAGGGTTTTGTTTCTAGCTCTCCTTC
TCCTTGCATCTCCGCTGCTTCAAGTTGCTAGATGTCAAGTAGATACCGAGGATCATTCGAGTATTGTTGACGATGTTGTGGGAGAA
CACAGCGATGATGGTGCTGAGGAAGATGATCAGGATTTGGATATCAACTTGACCTCTTCTCCTGGAGTTGAGACTGTCTCTGTTTT
CCCCAAAAACAGTGCCAAATTGGTGCCAGCTGGAGAAGAGACCGAGCTCCTTGTTGCTCTCAAAAACGATGGCAAATCTAGCGTAG
GTGTGATGGGGATTAGGGCCAGCGTCCATCTTCCTTATGATCATAAGCTCTTGGTTCAGAATCTTACCATGATGAGATTCAACAAT
GCGTCCATCCCAACTTCTGTTCAAGCAACATTCTCTTACATCTTTGCAGTCAGCCAGTACCTGCAGCCTGGAGCATTTGATCTGGT
GGGTTATATCATCTACGACGTGGAGGGGAAGCACACCAGAGTGTCTTCTACAATGGGACCATTGAGTAGTTGAATCTGGAGTCTTC
TCAGCGGTGAGTCTGTCTTCCTCGTACACTTGGGACTGCTCTCTCTCTCTCGGTCTATGGGCATACAGCAAGTGCAGCGTCTCTCA
GAAA
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002878536 hypothetical protein ARALYDRAFT_480966 [Arabidopsis lyrata subsp. lyrata] | 789 | 4e-082 |
| NP_565498 translocon-associated protein subunit alpha [Arabidopsis thaliana] | 773 | 3e-080 |
| AAM63845 putative signal sequence receptor, alpha subunit (SSR-alpha) [Arabidopsis thaliana] | 773 | 3e-080 |
| AAA21820 alpha-subunit; putative [Arabidopsis thaliana] | 756 | 3e-078 |
| NP_001077930 translocon-associated protein subunit alpha [Arabidopsis thaliana] | 736 | 6e-076 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
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| P45434 Translocon-associated protein subunit alpha | 773 | 1e-081 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q5M727 At2g21160 | 773 | 2e-080 |
| Q8LC49 Putative signal sequence receptor, alpha subunit (SSR-alpha) | 773 | 2e-080 |
| B9STC6 Translocon-associated protein, alpha subunit, putative | 522 | 3e-051 |
| A9PFV9 Predicted protein | 508 | 1e-049 |
| C6T7K0 Putative uncharacterized protein | 495 | 3e-048 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G21160.1 translocon-associated protein alpha (TRAP alpha) family protein | 773 | 1e-082 |
| AT2G21160.2 translocon-associated protein alpha (TRAP alpha) family protein | 736 | 3e-078 |
| AT2G16595.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: translocon-associated protein alpha (TRAP alpha) family protein (TAIR:AT2G21160.1); Has 191 Blast hits to 191 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 18; Plants - 38; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | 446 | 1e-044 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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