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Information for unigene UN59939
| FASTA Sequence |
| Unigene ID: UN59939 | Length: 785 |
SSR | | AGCTAAGCAAAAATCGAATCTCACACCTCATTCACACTCTCTCTCCTTCACAAAACTTCTATCTTCTTCATCTTCTTCCTCATTCT
CTCTCTCTTTCTCTTTCTCTTTCCTTTAACCCTCGCAGATGTCTTGTTGTGTGGTGGTGATATGAAGAACACCACTCAATCTCTCC
TCCTTCTCCTCTTCTTCTTCTTCTTCTTCTCTTTCCTCTTCTCTGTCCATTCTCTCTCCATTTCATCCAATGCTCCTCTCACCGAC
AACGAAGTCCGATTCATCCAACGCCGACAGCTCCTCTACTACCGCGACGAGTTCGGCGACCGTGGTGAGAACGTCACCGTAGATCC
GTCTCTCGTCTTCGAGAATCCAAGGCTCCGAAACGCTTACATAGCTCTCCAAGCTTGGAAGCAGGCCATTCTCTCTGATCCCAACA
ACATCACCCTCAACTGGATCGGATCCAATGTCTGTAACTACACCGGAGTGTTCTGCTCCCGCGCTCCTGATAACCGCCGGATCCGC
ACAGTCGCCGGGATAGACCTCCACCGCCGCCTTCTCCTGAATATGAGGGGCCACTACCGCCAGTGATCGGAGTATCCTATGCTTCT
CCTCCACCTCCACCCTTCTATTGATTCTTGGACAGGTAAAACCTAAATACAAACACGATGTTGTCGTTTCCAGTTACTCTTATGTA
AGATTGAAATCTAAAACCGTCATTGTTCATAGATTGTTTACAGAGACTAAGCGAGTGATCAAGATTGTCTTAGAAGATTTTTTGAT
GAAATAGACAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_189091 leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] | 582 | 5e-058 |
| XP_002885650 predicted protein [Arabidopsis lyrata subsp. lyrata] | 563 | 8e-056 |
| XP_002867981 hypothetical protein ARALYDRAFT_492992 [Arabidopsis lyrata subsp. lyrata] | 491 | 2e-047 |
| CAB37452 extensin-like protein [Arabidopsis thaliana] | 488 | 4e-047 |
| NP_193602 leucine-rich repeat extensin-like protein 5 [Arabidopsis thaliana] | 488 | 4e-047 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LHF1 Leucine-rich repeat extensin-like protein 4 | 582 | 2e-059 |
| Q9SN46 Leucine-rich repeat extensin-like protein 5 | 488 | 2e-048 |
| Q9T0K5 Leucine-rich repeat extensin-like protein 3 | 422 | 9e-041 |
| O48809 Leucine-rich repeat extensin-like protein 2 | 259 | 7e-022 |
| Q9LJ64 Pollen-specific leucine-rich repeat extensin-like protein 1 | 255 | 2e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9ILJ5 Predicted protein | 429 | 2e-040 |
| B9N8Z7 Predicted protein (Fragment) | 407 | 7e-038 |
| B9N902 Predicted protein (Fragment) | 398 | 8e-037 |
| B9IKQ3 Predicted protein | 312 | 7e-027 |
| B9RS81 Serine-threonine protein kinase, plant-type, putative | 270 | 5e-022 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G24480.1 leucine-rich repeat family protein / extensin family protein | 582 | 2e-060 |
| AT4G18670.1 protein binding / structural constituent of cell wall | 488 | 2e-049 |
| AT4G13340.1 leucine-rich repeat family protein / extensin family protein | 422 | 8e-042 |
| AT1G62440.1 LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2); protein binding / structural constituent of cell wall | 259 | 6e-023 |
| AT3G19020.1 leucine-rich repeat family protein / extensin family protein | 255 | 2e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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