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Information for unigene UN59939

FASTA Sequence
Unigene ID: UN59939Length: 785 SSR 
AGCTAAGCAAAAATCGAATCTCACACCTCATTCACACTCTCTCTCCTTCACAAAACTTCTATCTTCTTCATCTTCTTCCTCATTCT
CTCTCTCTTTCTCTTTCTCTTTCCTTTAACCCTCGCAGATGTCTTGTTGTGTGGTGGTGATATGAAGAACACCACTCAATCTCTCC
TCCTTCTCCTCTTCTTCTTCTTCTTCTTCTCTTTCCTCTTCTCTGTCCATTCTCTCTCCATTTCATCCAATGCTCCTCTCACCGAC
AACGAAGTCCGATTCATCCAACGCCGACAGCTCCTCTACTACCGCGACGAGTTCGGCGACCGTGGTGAGAACGTCACCGTAGATCC
GTCTCTCGTCTTCGAGAATCCAAGGCTCCGAAACGCTTACATAGCTCTCCAAGCTTGGAAGCAGGCCATTCTCTCTGATCCCAACA
ACATCACCCTCAACTGGATCGGATCCAATGTCTGTAACTACACCGGAGTGTTCTGCTCCCGCGCTCCTGATAACCGCCGGATCCGC
ACAGTCGCCGGGATAGACCTCCACCGCCGCCTTCTCCTGAATATGAGGGGCCACTACCGCCAGTGATCGGAGTATCCTATGCTTCT
CCTCCACCTCCACCCTTCTATTGATTCTTGGACAGGTAAAACCTAAATACAAACACGATGTTGTCGTTTCCAGTTACTCTTATGTA
AGATTGAAATCTAAAACCGTCATTGTTCATAGATTGTTTACAGAGACTAAGCGAGTGATCAAGATTGTCTTAGAAGATTTTTTGAT
GAAATAGACAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_189091 leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana]5825e-058
XP_002885650 predicted protein [Arabidopsis lyrata subsp. lyrata]5638e-056
XP_002867981 hypothetical protein ARALYDRAFT_492992 [Arabidopsis lyrata subsp. lyrata]4912e-047
CAB37452 extensin-like protein [Arabidopsis thaliana]4884e-047
NP_193602 leucine-rich repeat extensin-like protein 5 [Arabidopsis thaliana]4884e-047

Swiss-Prot top hits (Blast detail)Scoree value
Q9LHF1 Leucine-rich repeat extensin-like protein 45822e-059
Q9SN46 Leucine-rich repeat extensin-like protein 54882e-048
Q9T0K5 Leucine-rich repeat extensin-like protein 34229e-041
O48809 Leucine-rich repeat extensin-like protein 22597e-022
Q9LJ64 Pollen-specific leucine-rich repeat extensin-like protein 12552e-021

TrEMBL top hits (Blast detail)Scoree value
B9ILJ5 Predicted protein4292e-040
B9N8Z7 Predicted protein (Fragment)4077e-038
B9N902 Predicted protein (Fragment)3988e-037
B9IKQ3 Predicted protein3127e-027
B9RS81 Serine-threonine protein kinase, plant-type, putative2705e-022

Arabidopsis top hits (Blast detail)Scoree value
AT3G24480.1 leucine-rich repeat family protein / extensin family protein5822e-060
AT4G18670.1 protein binding / structural constituent of cell wall4882e-049
AT4G13340.1 leucine-rich repeat family protein / extensin family protein4228e-042
AT1G62440.1 LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2); protein binding / structural constituent of cell wall2596e-023
AT3G19020.1 leucine-rich repeat family protein / extensin family protein2552e-022

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  100%

Unigene Members