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Information for unigene UN60005
| FASTA Sequence |
| Unigene ID: UN60005 | Length: 760 |
SSR | | GGAGTAATAAGCAGATATAAAAGTCTCAAGGTAACCCACCAAGTCTCAACAATTGTAGAGAAGAAACAACAACAACAACAAACTTC
TTCAAATCTCTAATTTTCTCTGCCTCAAAATTCAACTACTCGCACGTAAAAAAGAAAGACACAACGGCAAAAGAGAAGTGTAGCTA
CATGTTTCTTTACCTTTCTTCAAGCATCTGTTGGAGAGTTCTCAGGTGTCTTCAACGGAGGAGCTGTTTCAATTGGTTTACTACCC
TTATGTTTGTCAACAGCCACACGAAACTCTTCCACAATCGTTGGGTCTTTGAACTTGAGCGCAAATGTAGAGAGACCATCTTTGCC
TTCACTATTCACACAAGCGAATGTGATTCCTTTCTTGTCCATGCTCGCAAGTTTCATCTCCGGGTAGAGACTCGCGTTTAAGATCA
ACCTGTAGTTCCCTTTAGCTCTCATGACTAGCCTCGCTTTACCACCGTTACTTGAGACGTTTACCTTGACTTCTCCTTTACCACGC
TCTCTCCATCCTCCGTCTTGATACTCAAACATGATGGAATCAGCTGAGAAGGCAGCATTCTCGTTCTCTTCTCCTGTTTCTGTTGA
AACCTCTTCTTTTGAAGGAAACCCGCCGCTACCTTAACTCTTCTTGATGATGGATGCACCGAAAAGAGAAGGGGTGTTGGTGGTTG
AAAGGCCTAAACCAAAGGGAGATCCAGAACCATCACCAAACGAGAACTTGGGAGAAAAGACTCTGTAGTGGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564606 nucleoporin 50 protein [Arabidopsis thaliana] | 706 | 2e-072 |
| AAM98235 unknown protein [Arabidopsis thaliana] | 706 | 2e-072 |
| XP_002891695 Ran-binding protein 1 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 696 | 3e-071 |
| XP_002885120 Ran-binding protein 1 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 586 | 2e-058 |
| NP_566532 NUP50 protein [Arabidopsis thaliana] | 584 | 3e-058 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q09717 Ran-specific GTPase-activating protein 1 | 145 | 1e-008 |
| Q9H6Z4 Ran-binding protein 3 | 129 | 8e-007 |
| Q4R4T9 Ran-binding protein 3 | 129 | 8e-007 |
| Q9CT10 Ran-binding protein 3 | 128 | 1e-006 |
| Q5R4Y2 Ran-binding protein 3 | 127 | 1e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L6Y2 Putative uncharacterized protein | 706 | 1e-072 |
| Q9C829 At1g52380/F19K6_4 | 706 | 1e-072 |
| Q9LW88 Genomic DNA, chromosome 3, P1 clone: MSL1 | 584 | 2e-058 |
| Q8LG62 Putative uncharacterized protein | 583 | 3e-058 |
| A5AWP1 Putative uncharacterized protein | 574 | 3e-057 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G52380.1 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein | 706 | 9e-075 |
| AT3G15970.1 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein | 584 | 1e-060 |
| AT5G58590.1 RANBP1 (RAN BINDING PROTEIN 1); protein binding | 123 | 4e-007 |
| AT2G30060.1 Ran-binding protein 1b (RanBP1b) | 115 | 3e-006 |
| AT1G07140.1 SIRANBP; Ran GTPase binding | 114 | 4e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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