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Information for unigene UN60476
| FASTA Sequence |
| Unigene ID: UN60476 | Length: 476 |
SSR | | GGGAACAGATTCGAAGGAAGAGAAAGCAGATTCATTGAGGGGGGAGTACAATGGGCAAATCATCATCTTCATCTAAGAAACTTAAA
CGCTCTAAAGAAGATCCCTCTAAGTTGCGATCGGTGAAGAAGAAGAAGACAAAGACGAAGAGAAGGAAGATTCGTCGGATTAAAGA
CTCTTCTGATGATAGTGAATCAGATTCTTCTTTCTACTCTTCTTCTTCTTCTAGTTCTGAAGAGGATTACAGGAGAGAGAAGCAGC
GCAGGTCTAAACTGAGCAAGAAGAAGAAGAGGGAGTCACGCAAGAGGTATTCTAGCAGCGACAGTGAGGGTGAGGATGATGACATT
CGTGTTAAGAAAAGGTCTAAGAGGAAGGACAAACATGTCATGACCAAGAAGAAGAGACGCAGGAGAGACACGAGTTCAAGTTCCAC
TAGTAGTGATGAGAATAGTGAGAGTAGTGATGGAATGAGAATGAGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866006 hypothetical protein ARALYDRAFT_918499 [Arabidopsis lyrata subsp. lyrata] | 328 | 3e-029 |
| NP_200204 uncharacterized protein [Arabidopsis thaliana] | 325 | 6e-029 |
| XP_001602537 PREDICTED: hypothetical protein LOC100118605 [Nasonia vitripennis] | 183 | 2e-012 |
| XP_001209073 predicted protein [Aspergillus terreus NIH2624] | 175 | 2e-011 |
| XP_002498615 ZYRO0G14608p [Zygosaccharomyces rouxii] | 172 | 4e-011 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A1A5I1 Protein FAM133 | 171 | 4e-012 |
| Q54V71 Uncharacterized protein DDB_G0280579 | 170 | 5e-012 |
| Q5ZLM8 Protein FAM133 | 166 | 2e-011 |
| Q3B7G7 Protein SFRS12IP1 | 151 | 8e-010 |
| Q5M9Q1 NKAP-like protein | 149 | 1e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FN33 Genomic DNA, chromosome 5, TAC clone: K19P17 | 325 | 4e-029 |
| Q0CX76 Predicted protein | 175 | 1e-011 |
| C5E0P8 ZYRO0G14608p | 172 | 2e-011 |
| Q6DRM1 FLJ22626-like | 170 | 4e-011 |
| Q4WX01 Nucleolin protein Nsr1, putative | 168 | 7e-011 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G53930.1 unknown protein | 318 | 4e-030 |
| AT5G49400.1 zinc knuckle (CCHC-type) family protein | 162 | 5e-012 |
| AT5G53800.1 unknown protein | 154 | 4e-011 |
| AT3G49601.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 58354 Blast hits to 32469 proteins in 1203 species: Archae - 56; Bacteria - 5471; Metazoa - 26539; Fungi - 6511; Plants - 2874; Viruses - 282; Other Eukaryotes - 16621 (source: NCBI BLink). | 149 | 1e-010 |
| AT1G70620.1 cyclin-related | 144 | 6e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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