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Information for unigene UN60589
| FASTA Sequence |
| Unigene ID: UN60589 | Length: 794 |
SSR | | GGGTAGCTTTGAAGCTAGAGAGAGAGAGATCAAGTGAGTGAGAGTGGTGTGGAAGCAGAATACACGATCTGCCCCTTTTTTTTATT
CTTCGATCGGAGCTTTCAGACATTCCGACAAAAGCAAATAAAAGGCTTCTTCTTTTGTTTCCGGGAGAGATTTGTCTCCCTCTGTT
TAGAAAATGGAGAGGTACGGTTGCGCCGGCGAAGAAGGGTCGCGATCGGATCCGTCGATTCAGTGGACCTCTCATGGAGTTGAAGC
TTCGATGACGCGTTTAGTGTTGAGCGGCGGCGGAGCTGGAGGAGGAGGAGAATCGTACCCGGAGCGATCCGATGAGCCTGATTGTA
TTTATTACTTGCGAACCGGTGTCTGCGGTTATGGGTCAAGATGTCGGTTTAATCACCCGCGAGATCGTGGAGCTGTTATTGGAGGT
GTGAGAGGAAGAGGAGGAGGAGATGGTGCTTTACCGGAGAGGATGGGACATCCGGTTTGCCAGCATTTTATGAGAACGGGGACATG
TCAGTTCGGTGCTTCTTGCAAGTACCATCATCCTAGACAAGGAGGTGGTTCTATTGCGCCTGTCTCTTTAAGTTATTTGGGATATC
CATTACGCCCGGGAGAGAAAGAGTGCTCTTATTACATGAGAACCGGTCAGTGTAAATTTGGTTTGACCTGTAGATTCAACCATCCA
GTTCCATTGGGCGTACATGGACAACAACCTCAGCAGCAGCCACAGCCGCAGATGCATTCTGTGTATCCACACTTCAATCTCAATCC
ATGCCTTCATCTCCTCAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884577 hypothetical protein ARALYDRAFT_477944 [Arabidopsis lyrata subsp. lyrata] | 874 | 7e-092 |
| ADK63414 CCCH type zinc finger protein [Brassica rapa] | 839 | 8e-088 |
| CAN78551 hypothetical protein VITISV_003243 [Vitis vinifera] | 641 | 8e-065 |
| XP_002276435 PREDICTED: hypothetical protein [Vitis vinifera] | 628 | 2e-063 |
| XP_002516892 nucleic acid binding protein, putative [Ricinus communis] | 622 | 1e-062 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SQU4 Zinc finger CCCH domain-containing protein 34 | 896 | 1e-095 |
| Q6NPN3 Zinc finger CCCH domain-containing protein 58 | 745 | 3e-078 |
| Q84W91 Zinc finger CCCH domain-containing protein 32 | 516 | 1e-051 |
| Q5NAW2 Zinc finger CCCH domain-containing protein 6 | 489 | 1e-048 |
| Q5JLB5 Zinc finger CCCH domain-containing protein 12 | 472 | 1e-046 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A5B1K6 Putative uncharacterized protein | 641 | 5e-065 |
| B9RT23 Nucleic acid binding protein, putative | 622 | 9e-063 |
| B9N500 Predicted protein | 616 | 4e-062 |
| B9HSD6 Predicted protein | 604 | 1e-060 |
| B9S3U9 Nucleic acid binding protein, putative | 548 | 3e-054 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G06410.1 nucleic acid binding / zinc ion binding | 896 | 9e-097 |
| AT5G18550.1 nucleic acid binding / zinc ion binding | 745 | 3e-079 |
| AT2G47850.1 zinc finger (CCCH-type) family protein | 516 | 1e-052 |
| AT2G47850.3 zinc finger (CCCH-type) family protein | 516 | 1e-052 |
| AT3G02830.1 ZFN1 (ZINC FINGER PROTEIN 1); DNA binding / nuclease/ nucleic acid binding | 448 | 8e-045 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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