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Information for unigene UN60756
| FASTA Sequence |
| Unigene ID: UN60756 | Length: 712 |
SSR | | GGACGGCCGACATATCTTATTCGATTCCGAGTCGCATTGGCTTCCGGTTCTGCTGCTTTTTTCCTGATGGCAAAAGCGCTTGGAAC
ATGAGCACTGCAATGGTTCATAGGGATTTAGAGAGGGAATGGGAGAGATCAATGTGGACTTGTTTCATATTGTCTTTTTTTCTTTC
TTTATTATTATTGGAGTTTCTTTTTCCAAAAAAAAAAAAAAAAAAAATCATGGGAAGATCTGGAGAAAAAATAGATTTTCTTTTCA
TAATAGCTTTTGGAGCACATTGGAGCTTTGTGGAGCACCAAGGATTGCTCTCACTTGGTTTGCTTCATACATATATTGGTCTTATC
ATCATCATCATCTTTTTTTCTATAGATATGCTGATGATAGATGGAAAGCTGGTCTGAGTGGAGGTTCTTTGCCTATAGCAGTGAAC
TTTGGTCCTTTATTTATTTTGTCCTCTTTTATTTGTATCTGCAGTTACTTTTGTTTTAACAACATTTGCAAACAATGAGTGGTCGA
TTTTCTCGTTCCATCTATGTTGGCAACTTGCCCGGTGACACTAGGGAGTCCGAGATTGAAGATCTCTTTTACAAGTATGGCCGCAT
AGTTGATATTGAATTGAAGGTTCCACCTCGTCCTCCATGCTATTGCTTTGTTGAGTTTGAGCATGCTCGGGACGCGGAGACGCCGT
CGATGGCCGTGATGGCTACACTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002875964 hypothetical protein ARALYDRAFT_906222 [Arabidopsis lyrata subsp. lyrata] | 306 | 4e-026 |
| NP_190512 putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana] | 304 | 7e-026 |
| AAG52185 putative splicing factor; 53460-55514 [Arabidopsis thaliana] | 304 | 7e-026 |
| CAB62448 PRE-MRNA SPLICING FACTOR SF2-like protein [Arabidopsis thaliana] | 304 | 7e-026 |
| NP_001078264 putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana] | 304 | 7e-026 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O22315 Pre-mRNA-splicing factor SF2 | 231 | 1e-018 |
| Q9NEW6 Probable splicing factor, arginine/serine-rich 3 | 166 | 4e-011 |
| Q0VCY7 Splicing factor, arginine/serine-rich 1 | 155 | 7e-010 |
| Q5ZML3 Splicing factor, arginine/serine-rich 1 | 155 | 7e-010 |
| Q07955 Splicing factor, arginine/serine-rich 1 | 155 | 7e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A2RVS6 At3g49430 | 304 | 5e-026 |
| A8MR30 Uncharacterized protein At3g49430.2 | 304 | 5e-026 |
| Q9CA06 Putative splicing factor; 53460-55514 | 304 | 5e-026 |
| Q9SCL3 PRE-MRNA SPLICING FACTOR SF2-like protein | 304 | 5e-026 |
| B9IDH4 Predicted protein | 293 | 1e-024 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G49430.1 SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding | 304 | 3e-028 |
| AT3G49430.2 SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding | 304 | 3e-028 |
| AT1G09140.1 SF2/ASF-like splicing modulator (SRP30) | 238 | 1e-020 |
| AT1G09140.2 SF2/ASF-like splicing modulator (SRP30) | 238 | 1e-020 |
| AT1G02840.1 SR1; RNA binding / nucleic acid binding / nucleotide binding | 231 | 1e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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