 |
Information for unigene UN60865
| FASTA Sequence |
| Unigene ID: UN60865 | Length: 722 |
SSR | | CTTTTGTTATTGATAATCAGCGAAGTTTACAAATATGCAAAAATGAGACTAAAATAAAGAAAGATTTTAAGCCAAACTTCATTGTG
CATACAGAAAAGTTTCTAACAATTAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATACACTTTTACATGAC
AGAGCTTATTTTCTTTTCAAAGAACGTGACACATTTTTCAGACCAAATAAAAAACCACCCACGACGTAGCTATATCCTGACACTTG
AAAAGTGTTGAAAGCAATGTTGTTAATGATGTCATCATTGAGGAGAAGAATGAGCAGGAGGAGCTCTGTAAATGGCAGGAATGGTT
CGAGGGAAGAACATTTGCCTCACACCTTCTGCTTTTATAATTGGAAATATAATCCCTGAAGCACTCGAGATAAGTCTAGCTCCAAG
CCACAACCGTTTAACTGAAGGAAGAGGAACAAGCAAACGACCAACACCGAATATAGCCACAGCGAAAAAATGAAGAACAAGACTCA
TAGGTCTCGGGTTCAAACCCGACAGCAAGGCCACTGGTCCCGACGAGCAAACACCTCCAAGGCTAAGATAATCAAAGCAAGCTCGA
CGCATCTCGCTTCTCGCATCGTCAGGAGATGCCAAGAACACTTTATACAAAGCCCCCGCGAGTGTATTTATAGTCGACGCAACAGG
TTTCCTCAACGTGTAGAACGACTCAATGTACTTA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAB38924 squalene epoxidase-like protein [Arabidopsis thaliana] | 698 | 2e-071 |
| NP_568033 squalene epoxidase 3 [Arabidopsis thaliana] | 698 | 2e-071 |
| AAM61384 squalene epoxidase-like protein [Arabidopsis thaliana] | 698 | 2e-071 |
| XP_002868966 hypothetical protein ARALYDRAFT_490840 [Arabidopsis lyrata subsp. lyrata] | 691 | 1e-070 |
| XP_002265132 PREDICTED: hypothetical protein [Vitis vinifera] | 624 | 6e-063 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O48651 Squalene monooxygenase | 610 | 1e-062 |
| O65404 Squalene monooxygenase 1,1 | 328 | 6e-030 |
| O65726 Squalene monooxygenase 1,2 | 321 | 4e-029 |
| O65402 Squalene monooxygenase 1,2 | 314 | 2e-028 |
| O65727 Squalene monooxygenase 1,1 | 273 | 1e-023 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LFJ1 Squalene epoxidase-like protein | 698 | 1e-071 |
| Q8VYH2 AT4g37760/T28I19_40 | 698 | 1e-071 |
| Q9T064 Squalene epoxidase-like protein | 698 | 1e-071 |
| B6V3J2 Squalene epoxidase 1 | 620 | 1e-062 |
| A5AMJ1 Putative uncharacterized protein | 617 | 3e-062 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G37760.1 SQE3 (squalene epoxidase 3); squalene monooxygenase | 699 | 5e-074 |
| AT2G22830.1 SQE2 (squalene epoxidase 2); FAD binding / oxidoreductase/ squalene monooxygenase | 600 | 2e-062 |
| AT1G58440.1 XF1; squalene monooxygenase | 553 | 5e-057 |
| AT5G24150.1 SQP1; squalene monooxygenase | 328 | 6e-031 |
| AT5G24160.1 SQE6 (SQUALENE MONOXYGENASE 6); FAD binding / oxidoreductase/ squalene monooxygenase | 314 | 2e-029 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
| Unigene Members | |
 |
|
|
