 |
Information for unigene UN60899
| FASTA Sequence |
| Unigene ID: UN60899 | Length: 684 |
SSR | | ACTCTGGATTAAAGTTGTAATATATTCTAAGAAATAAAAAATCTCTAACACAAGAGAAGAAAGAAGAGGTAGCATTGACAGGTACA
AAGACACCTGCAGGGAGATAATAATAGTAGCACCACACCAAAATCCAAAATGGAGGGGGTTTATTTCTTAGCATAGGTGATGTGCA
TAGGAGTTTGGTGAATGGTGAAACCTTCAAGACCGTGCATAGCAGCGGTAGACTGCATCTCGTCAGCAAACTCAACGAAAGCAATA
CCAGGCTTGGCTGCAACCATCCTAACCTCCTTGAAGCCATGGTAATTGCCGAAGAGTTCCTGAAGCCTCTCAGGAGTTGTGTCGTG
AGGAAGGTGTTGGACAAAGAGGATGTTGTTCGGGGGTGCCGGTGCTTCGGGAAGATTGCTTTTGACACCACCACCACCACCACCAG
GGTATGGTACTTGCGAAAGAGGAGGGGCAGATCCATAGACACCAGGATATGGTGGAATGGGCATACGTGTATTATCATGGTGCTGC
TCTTTCTTTTTCTTACCACCTTTCTCCTCGTGTCGCTTTCGTTTCTCGCGAGGAACAAAGGTTCCGTCAGCCTTGGCAATAACATC
TGATTTTGTTTTTGCAAATTGTATTCTCATGGGTTTGTCGTAGAAGGGGAATCCATTCATCTTGGAAATAGCATTGGAAGCA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880313 hypothetical protein ARALYDRAFT_483938 [Arabidopsis lyrata subsp. lyrata] | 712 | 3e-073 |
| NP_182280 spliceosomal protein U1A [Arabidopsis thaliana] | 709 | 7e-073 |
| XP_002523100 small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis] | 635 | 3e-064 |
| ABK94716 unknown [Populus trichocarpa] | 622 | 9e-063 |
| XP_002320337 predicted protein [Populus trichocarpa] | 622 | 9e-063 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54J05 U2 small nuclear ribonucleoprotein B'' | 304 | 3e-027 |
| Q2KIR1 U1 small nuclear ribonucleoprotein A | 192 | 3e-014 |
| P09012 U1 small nuclear ribonucleoprotein A | 192 | 3e-014 |
| Q62189 U1 small nuclear ribonucleoprotein A | 192 | 3e-014 |
| Q06AA4 U1 small nuclear ribonucleoprotein A | 192 | 3e-014 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39244 At2g47580/T30B22.12 | 709 | 5e-073 |
| B9SAT1 Small nuclear ribonucleoprotein U1a,U2b, putative | 635 | 2e-064 |
| A9PEB3 Putative uncharacterized protein | 622 | 6e-063 |
| B9I9Q4 Predicted protein | 622 | 6e-063 |
| B9GSB4 Predicted protein | 616 | 3e-062 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G47580.1 U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding | 710 | 3e-075 |
| AT2G30260.1 U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding | 414 | 5e-041 |
| AT1G06960.1 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 228 | 2e-019 |
| AT1G06960.2 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 228 | 2e-019 |
| AT1G06960.3 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 228 | 2e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
| Unigene Members | |
 |
|
|
