 |
Information for unigene UN61545
| FASTA Sequence |
| Unigene ID: UN61545 | Length: 784 |
SSR | | GAAGGACACAGCTTTTCTTCATCTTCTTTCTCTGTCACCGACTCTCCCACCAAGTCTACCTTCTGTCCAGAGATCGTGCTTGAGGG
AGTTCCGCATGTCTCTTCAGTTCTAAATCTCAAAACATTTTGTGTGTTAAGTGCCATTTTTGATTTGATTGGAAATGAGAAAGCAA
AGCATCAGAGAAACCTTGAAATCTTTCTTTGAGCCTCATCTTCATCCTGACAATGCCGAATTGCTCAAAGGAACCAAAACTGAAAT
AGATGAAAAGGTGAATAGAATCTTGGGGATCGTTGAGAGTGGTGACATTGAGGAAGATGAATCCAAAAGAGCAGTGGTTGCAGAGT
TGGTGAAAGAATTCTACAGAGACTATGAGTCCTTGTATAACCAATACGATGATCTCACGGGTGAGATCAGGAGAAAAGTTCATGGG
AAAGGAGAGAACGATAGCTCTTCTTCTTCTTCTTCTTCAGGCTCAGACTCTGACTCAGATAAGAAGAGCAAGAGAAACGGGCGTGC
TGACAATGACATGATGGAGTCTGTAAAGAAACAGATGGAAGCTGCTAATCTCGAAATCGCTGATCTGAAAAGGAAGTTAGAAACAA
CCGTTGAAGAGAAGGAAGCAGAACATCAAGAAACCTTGAAGAAGCTGAAGGATCAGAAGACGTCATTGGAGATTTGAGACTCGAAA
CTGAAACCCTAGCACCGAGAACAAAGAGCTTAACCAGAAACTGGAAGCTGCTGGGGAGAGAAACCGATCAGATCAGAAGCTAGATG
ATGTGACAAG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_176615 myosin heavy chain-related protein [Arabidopsis thaliana] | 648 | 1e-065 |
| NP_198994 COP1-interactive protein 1 [Arabidopsis thaliana] | 529 | 7e-052 |
| XP_002303631 predicted protein [Populus trichocarpa] | 366 | 6e-033 |
| XP_002509929 Centromeric protein E, putative [Ricinus communis] | 358 | 5e-032 |
| XP_002299490 predicted protein [Populus trichocarpa] | 311 | 1e-026 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C7V7 At1g64330 | 648 | 8e-066 |
| B9GXF7 Predicted protein | 366 | 4e-033 |
| B9RCP5 Centromeric protein E, putative | 358 | 3e-032 |
| B9GL85 Predicted protein | 311 | 1e-026 |
| A5BWZ1 Putative uncharacterized protein | 191 | 8e-013 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G64330.1 myosin heavy chain-related | 648 | 5e-068 |
| AT5G41790.1 CIP1 (COP1-INTERACTIVE PROTEIN 1); protein binding | 529 | 3e-054 |
| AT2G30500.1 kinase interacting family protein | 149 | 4e-010 |
| AT1G03080.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT3G22790.1); Has 169162 Blast hits to 69460 proteins in 2232 species: Archae - 2114; Bacteria - 24914; Metazoa - 82448; Fungi - 11850; Plants - 6375; Viruses - 760; Other Eukaryotes - 40701 (source: NCBI BLink). | 117 | 2e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
| Unigene Members | |
 |
|
|
