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Information for unigene UN61938

FASTA Sequence
Unigene ID: UN61938Length: 625 SSR 
GGGTCGGATTTGGTAAAGAGGAATTGAGCGAATAGGTTGATTGATTGATTGATTGAGAAAGTAGTAATGGGAAGCGCACCAGCACA
GATTCCGACTAGCTTCGGCCATGAGCTTAGGGCTTGTCTTCGCTGCCGACTCGTCAAGACCTATGACCAGTTCGGGGACGCAGGGT
GCGAGAATTGTCCGTTCTTCAAGATGGAAGAGGATCACGAGCGTATCGTCGAAGTCACTACTCCTAATTTCAATGGCATAATATCT
GTGATGGATCCAAGTAGAAGCTGGGCGGCTAGGTGGTTAAGAATCGGGAAGTTTGCTCCTGGTTGCTACACTCTCGCTGTCTCCGA
GCCACTCACAGAGGAAATGCAGCACATATGCCAAGAAGAGCGTGTACAATACGTTCCTCCGAAACGCATGTAAAAGCAAATACATC
AAGACATAGAACGCAATTTCCAAGATGTCGTTGCTTCTTTGAGTACCTTAGGTTTCCATCTATGTAAGGTCGTTATGTATAACTTT
TGAACTTCCCAGACCAAATGCTTCTCTGAGAGAAAACGTTTTGTTAGGAGAAGTGTAAACATCAGTACGAAGCCAACTCTAAGCTT
CTTGGATTATAAAACGTTTTGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ACF23020 ST5-18-3 [Eutrema halophilum]6173e-062
NP_568976 transcription elongation factor SPT4-2 [Arabidopsis thaliana]6102e-061
NP_568201 transcription elongation factor SPT4-1 [Arabidopsis thaliana]5672e-056
XP_002871347 positive transcription elongation factor/ zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]5635e-056
AAM63465 unknown [Arabidopsis thaliana]5627e-056

Swiss-Prot top hits (Blast detail)Scoree value
Q94C60 Transcription elongation factor SPT4 homolog 26109e-063
Q8LCQ3 Transcription elongation factor SPT4 homolog 15679e-058
Q6DGQ0 Transcription elongation factor SPT42131e-016
P63271 Transcription elongation factor SPT4 12058e-016
Q3SYX6 Transcription elongation factor SPT42058e-016

TrEMBL top hits (Blast detail)Scoree value
B4YYA3 ST5-18-36172e-062
B9RGK4 Suppressor of ty, putative5491e-054
C6T0C5 Putative uncharacterized protein5446e-054
A9PK54 Putative uncharacterized protein5421e-053
B9HUZ8 Predicted protein5421e-053

Arabidopsis top hits (Blast detail)Scoree value
AT5G63670.1 SPT42 (SPT4 HOMOLOG 2); positive transcription elongation factor/ zinc ion binding6117e-064
AT5G08565.1 positive transcription elongation factor/ zinc ion binding5687e-059

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  100%

Unigene Members