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Information for unigene UN62075
| FASTA Sequence |
| Unigene ID: UN62075 | Length: 763 |
SSR | | GGGACGGGTGGAAGCTTCTGATTCAATGGGTAAGGCGAAGGTGAAACCTGTGGATGATGTGAAACCGGAAGTGGAAGAAGCTGATA
AAGTAGAGGAAGTTGAAGAACAGAGAGACGGCGGAGAAGTAGCAGCAGAAGAAGAAGAAGAAGAGGCGGAGCAAGATAAGAGCTTT
GAGGAGCTAGGGCTTGATCCTCGTCTCATTCGCGCTTTATCTAAAAAGGGTATAGAGAAACCCACTCCTATTCAGCAAACAGCCAT
TCCTTACATCCTGGAAGGGAAGGATGTGGTTGCTAGGGCTAAGACTGGCTCAGGGAAGACATTGGCTTACCTTCTTCCCTTGCTTC
AGAAGCTGTTTTCAGAGTCCGGGAGGAAGAAGAAGCCTGCTCCTTGTGCGTTTGTTCTCGTTTCTTCTCGTGAGTTGTGTCAGCAG
GTCTACACTGAGGTTTCTTGGCTTATAGAGTTGTGTCGTGTTCAGCTTAAAGCTGTGCAATTGACTAGTAGCATGCCTGTATCTGC
TATGCGAAACGCATTGGCCAGCTTGCCTGAGATTCTAGTCACCACACCTGCTTGTATTCCTAAATGTTTGGCCGATGGGGTTTTAG
ATCCCGCAGCTATCAGTGACTCGCTTGAGATTTTGGTTCTTGATGAGGCAGATCTTTTGTTGTCGTATGGATATGAGATAATCTAA
AGTCGGTAACCTCCATGTCCCAAGACGTTGCCATGCCTCCTTATGTCTGCTACCACAAGTTCTGATGTCGAGAAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867100 hypothetical protein ARALYDRAFT_491167 [Arabidopsis lyrata subsp. lyrata] | 863 | 1e-090 |
| NP_195217 DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana] | 859 | 4e-090 |
| XP_002530611 dead box ATP-dependent RNA helicase, putative [Ricinus communis] | 690 | 1e-070 |
| ABK92556 unknown [Populus trichocarpa] | 641 | 7e-065 |
| XP_002310257 predicted protein [Populus trichocarpa] | 641 | 7e-065 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SW44 DEAD-box ATP-dependent RNA helicase 16 | 859 | 2e-091 |
| Q6ATJ8 DEAD-box ATP-dependent RNA helicase 16 | 560 | 8e-057 |
| Q7S6F3 ATP-dependent RNA helicase dbp-9 | 384 | 2e-036 |
| A1C7F7 ATP-dependent RNA helicase dbp9 | 378 | 1e-035 |
| Q2UFL0 ATP-dependent RNA helicase dbp9 | 377 | 1e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SX92 Dead box ATP-dependent RNA helicase, putative | 690 | 1e-070 |
| A9P853 Putative uncharacterized protein | 641 | 5e-065 |
| B9HF37 Predicted protein | 641 | 5e-065 |
| B7EEE3 cDNA clone:J013129E17, full insert sequence | 560 | 1e-055 |
| B8ALP4 Putative uncharacterized protein | 560 | 1e-055 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G34910.1 DEAD/DEAH box helicase, putative (RH16) | 859 | 2e-092 |
| AT5G60990.1 DEAD/DEAH box helicase, putative (RH10) | 250 | 7e-022 |
| AT3G22330.1 PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | 235 | 4e-020 |
| AT5G26742.1 emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding | 227 | 3e-019 |
| AT5G26742.2 emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding | 227 | 3e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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