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Information for unigene UN62310
| FASTA Sequence |
| Unigene ID: UN62310 | Length: 794 |
SSR | | GGAAAGACTCTCTGCACTTTCTTCTTCTTCTCGCTGCTCCTCCCGAAGCTCAGAACGATGCCGAGGTATTACTGTGATTATTGTGA
CACTTATCTCACCCACGATTCCCCATCGGTGAGGAAGCAGCACAACGCCGGTTACAAACACAAGGCGAATGTGAGGATATACTATC
AGCAATTCGAGGAACAGCAAACACAAAGTCTGATTGATCAGAGAATTAAAGAGCATCTTGGCCAAGCTGCAGCGTACAATCAGGTT
GGTGGTGCGTTTAACCAGCATATGCTCGCTAGACCACGCCTCCCTATGATGCCTATGCCTATGGGGATGCGACCTCCTGTTCTCCC
TAGACCCATGATGCCTGGTCAAGGTTACATGCCACCTCCGGGAGTACCACAGATGATGGCACCGCCTGGTGCTCCTCTACCACCGC
CTCCACAAAACGGTATGCTTAGGCCACCAGGAATGGCTCCATTACCAGGTCAAGGTGGTGGACCACCTCCCAATTATAATGGACTT
CCTCTTCCTCCGCCTCCTCCTTATCAAACAAATCCAGCTGCTGCTGCTGCTGCTGCTCCGCCGAGCGGTGGCTTCAACAATCCGAA
CCTTGGTGGTGAATCTCCTGAAAGCAATGAGTAGAGTTTAGTCTGTTGAGTTATTTTTCTCCTGCCAAAACATTCTCAGGCTCTTG
TTTAGCATTATCTTTCTAATTATGTATGTGCATGCATAATTTCATGTGCTAATTTGTCTTTTGTAGATGTGAAAGTCTCTATACGA
ACAGTCATCAGTCTGTTTGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002874880 hypothetical protein ARALYDRAFT_911890 [Arabidopsis lyrata subsp. lyrata] | 890 | 1e-093 |
| NP_567250 C2H2 and C2HC zinc finger-containing protein [Arabidopsis thaliana] | 886 | 3e-093 |
| AAO44073 At4g03120 [Arabidopsis thaliana] | 881 | 1e-092 |
| XP_002520698 U1 small nuclear ribonucleoprotein C, putative [Ricinus communis] | 534 | 2e-052 |
| XP_002452566 hypothetical protein SORBIDRAFT_04g028260 [Sorghum bicolor] | 531 | 4e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P09234 U1 small nuclear ribonucleoprotein C | 280 | 3e-024 |
| Q03369 U1 small nuclear ribonucleoprotein C | 280 | 3e-024 |
| Q62241 U1 small nuclear ribonucleoprotein C | 278 | 4e-024 |
| Q32PA0 U1 small nuclear ribonucleoprotein C | 276 | 7e-024 |
| Q54YA5 U1 small nuclear ribonucleoprotein C | 247 | 2e-020 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q56XE4 Putative C-type U1 snRNP | 886 | 2e-093 |
| Q84VV2 At4g03120 | 881 | 8e-093 |
| B9S3X9 U1 small nuclear ribonucleoprotein C, putative | 534 | 1e-052 |
| C5XYW4 Putative uncharacterized protein Sb04g028260 | 531 | 3e-052 |
| Q9ZR19 Putative C-type U1 snRNP | 509 | 1e-049 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G03120.1 proline-rich family protein | 887 | 1e-095 |
| AT1G61080.1 proline-rich family protein | 152 | 2e-010 |
| AT4G20440.1 smB (small nuclear ribonucleoprotein associated protein B) | 142 | 2e-009 |
| AT5G44500.1 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative | 142 | 2e-009 |
| AT5G44500.2 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative | 142 | 2e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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