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Information for unigene UN63254
| FASTA Sequence |
| Unigene ID: UN63254 | Length: 530 |
SSR | | GGACTCTGGATTGGATTAGAGTTTTGTTTTGTATTTTTCTCGTTCGATATTTTCAATCTTGTTTGTATCCCGTCCCTCCCCTTCGT
ATATAATAATAATCTCAGTCACACAAAAGTGATTTTATCCGTTGATGATGACGGAGGAGAACAAGAGAAGCAGGTTCAGTAAAGTT
TGTGTCTTTTGCGGAAGCAACTCTGGTAATAGAGAACTTTTCAGTGATGCTGCTATCGAACTCGCCAATGAACTCGTTTGCCTCTC
TCTCTCTCTCTGTTTTCTTCCTCTAATGATTTGCTTATTGTTTGGTTTCGTGATAAAGACACCACCTTTTCAAAACATTGAGGATA
AAGAAATCAACTTTTTTCGAAAAATAAGACTGAGAAAGAACAGAGCTTTTTGAATACCTAACATGGCTGGAAAACAGAGCATTTTG
AATATCTTGTTTGTATCCCCCGTCTCTCTCTGTTTGGTTGATTGGATTTTTAGTTTAATGTTTACGTTCAATGTATCCTTTGGATT
TGATTGTTCATCTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| 1YDH Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At5g11950 | 162 | 1e-009 |
| NP_196756 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Arabidopsis thaliana] | 161 | 1e-009 |
| CAB87668 lysine decarboxylase-like protein [Arabidopsis thaliana] | 161 | 1e-009 |
| XP_002278305 PREDICTED: hypothetical protein [Vitis vinifera] | 156 | 5e-009 |
| XP_002872198 predicted protein [Arabidopsis lyrata subsp. lyrata] | 156 | 5e-009 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
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| Q84MC2 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 | 161 | 7e-011 |
| Q8LBB7 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 | 131 | 2e-007 |
| Q8LR50 Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL1 | 129 | 4e-007 |
| Q7XDB8 Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 | 126 | 9e-007 |
| Q9LYV8 Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG6 | 123 | 2e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| A5C3Z8 Putative uncharacterized protein | 156 | 4e-009 |
| B9HDC8 Predicted protein | 145 | 7e-008 |
| C6T0I5 Putative uncharacterized protein | 145 | 7e-008 |
| B9RQS0 Carboxy-lyase, putative | 139 | 3e-007 |
| B9SIB8 Carboxy-lyase, putative | 131 | 3e-006 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT5G11950.1 protein homodimerization | 161 | 8e-012 |
| AT5G11950.2 protein homodimerization | 161 | 8e-012 |
| AT4G35190.1 unknown protein | 131 | 2e-008 |
| AT5G03270.1 unknown protein | 123 | 2e-007 |
| AT2G35990.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: carboxy-lyase (TAIR:AT5G06300.1); Has 3002 Blast hits to 3001 proteins in 744 species: Archae - 8; Bacteria - 1757; Metazoa - 10; Fungi - 79; Plants - 185; Viruses - 0; Other Eukaryotes - 963 (source: NCBI BLink). | 122 | 3e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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