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Information for unigene UN63797
| FASTA Sequence |
| Unigene ID: UN63797 | Length: 748 |
SSR | | ACCTACTATAATGACATAGGTCCTACTGTCAAATACATGTGATAACGATTCACATATAATAATAGAAACGTACAGAACAATAAGAG
CAGTGTAAATAGACTGTCTAACCACTTGAAATCATACAAAATTCAGAAACATGGAATCTGATCATGATAATAACCTAGAAAACAAA
AAAAAAGATCCGTCAGCTTTCCTTGTTTCTGAAGCAATCTCTGAAAATGCCAATTGAGGAAAACCTTCTCCTTTACTTACTTTTCT
GCTGCACTATGCTTATAATTAAACCCTTGTCTGAAGTATACACCCTCCATGACTGCAGTCTCCACCGTCTTGAAACAAACGGTTGA
AGCAAGCATGAAAGGATTCACATTAAGAACACCAAAAAGGACAAGGATCTCTCTCTGTCTCAAGAACAGAGCCATTAACTTTAAAA
CCCTCTCTTGTCAGGACAATCTGCTGCCCTGTGTCCTGAACTTCCACAGTTGAAGCAAGCACCTCCAAAACTCCTCTCCCTAGAAG
GAGCTCTGCTGCTTGATCTTCTGTCACTACCGCCGCCAATCAACCAATCATCAGAACTTCCTCTGGAACCACCACCACCACCACGG
GACCAGCTGCTACCTCCACCACCACTGCTTCTGCTTCTTCTGTCATCATCACCTCCCCGACTATCACGTCCTCGTGATGATCCTCC
TCCTCTACCGCCAAATCTTGACCCTCTAGAACCTCCTCCTCCTCTAGGCATCCTGTCTCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001031943 DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] | 437 | 3e-041 |
| AAM91087 At5g26740 [Arabidopsis thaliana] | 437 | 3e-041 |
| XP_002874312 RNA helicase [Arabidopsis lyrata subsp. lyrata] | 437 | 3e-041 |
| NP_001190402 DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] | 437 | 3e-041 |
| CAA09196 RNA helicase [Arabidopsis thaliana] | 433 | 9e-041 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8L7S8 DEAD-box ATP-dependent RNA helicase 3 | 437 | 1e-042 |
| Q0DM51 DEAD-box ATP-dependent RNA helicase 3 | 192 | 4e-014 |
| Q6EIY9 Keratin, type II cytoskeletal 1 | 141 | 3e-008 |
| P04104 Keratin, type II cytoskeletal 1 | 136 | 1e-007 |
| P48810 Heterogeneous nuclear ribonucleoprotein 87F | 134 | 2e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9PJW0 Putative uncharacterized protein | 261 | 6e-021 |
| B9N3Z4 Predicted protein | 261 | 6e-021 |
| Q2HUZ8 Helicase, C-terminal; Zinc finger, CCHC-type; GUCT | 236 | 4e-018 |
| B9RFT3 Dead box ATP-dependent RNA helicase, putative | 206 | 1e-014 |
| Q9XTZ2 Protein C18D11.4, confirmed by transcript evidence | 166 | 6e-010 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G26742.2 emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding | 438 | 1e-043 |
| AT5G26742.1 emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding | 421 | 1e-041 |
| AT4G36230.1 unknown protein | 130 | 5e-008 |
| AT2G05580.1 unknown protein | 127 | 1e-007 |
| AT1G31290.1 PAZ domain-containing protein / piwi domain-containing protein | 121 | 6e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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