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Information for unigene UN63960
| FASTA Sequence |
| Unigene ID: UN63960 | Length: 583 |
SSR | | GGAGGGAAGAAGGAAAGTTAAGAAACTCTCTCTCTCTCTTTCTCTCTGCTTCACCTTCATTCTAAAACCCTAAGAAAAGTTAGAGA
GATGGACAGTGGTGCCACTTACCAGAGATTCCCGAAGGTGAAGATCCGTGAGCTCAAAGATGACTACGCCAAGTTCGAGCTTCGTG
ACACCGATGTTTCGATGGCGAACGCTCTCCGTCGCGTTATGATCTCCGAAGTCCCCACGGTCGCAATCGATCTGGTCGAAATCGAG
GTTAATTCCTCTGTTCTCAACGACGAGTTCATCGCTCATCGATTAGGTCTCATCCCTCTCACAAGCGAACGTGCGATGAGCATGCG
CTTCTCTCGAGACTGCGATGCTTGCGACGGAGATGGGCAGGGCGAGTTTTGCTCTGTTGAGTTTCATCTTAGAGCTAAATGTATCA
CTGACCAAACCCTAGATGTTACTAGTAGGGATCTCTACAGTGCTGATCCTACTGTCACTACTGTTGATTTCGGTATCGATTCATCT
GGAGCTGACTCAAGCAAGCAAAGGGGCATTATCATAGTCAAACTGAGACGTGGACAAGAACTGAAGC
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002883895 RBP36A [Arabidopsis lyrata subsp. lyrata] | 755 | 2e-078 |
| NP_179145 DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis thaliana] | 750 | 9e-078 |
| AAM65319 DNA-directed RNA polymerase II, third largest subunit [Arabidopsis thaliana] | 742 | 7e-077 |
| XP_002518700 DNA-directed RNA polymerase II subunit, putative [Ricinus communis] | 725 | 7e-075 |
| XP_002883894 RBP36A [Arabidopsis lyrata subsp. lyrata] | 718 | 5e-074 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q39211 DNA-directed RNA polymerase II subunit RPB3-A | 750 | 5e-079 |
| Q39212 DNA-directed RNA polymerase II subunit RPB3-B | 663 | 6e-069 |
| Q3T0Q3 DNA-directed RNA polymerase II subunit RPB3 | 359 | 1e-033 |
| P19387 DNA-directed RNA polymerase II subunit RPB3 | 353 | 5e-033 |
| P97760 DNA-directed RNA polymerase II subunit RPB3 | 352 | 7e-033 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit | 742 | 5e-077 |
| B9RYB6 DNA-directed RNA polymerase II subunit, putative | 725 | 5e-075 |
| A5B429 Putative uncharacterized protein | 701 | 3e-072 |
| A8MR04 Uncharacterized protein At2g15400.2 | 663 | 8e-068 |
| Q0WRA4 DNA-directed RNA polymerase II, third largest subunit | 663 | 8e-068 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G15430.1 NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization | 750 | 5e-080 |
| AT2G15400.1 NRPE3B; DNA binding / DNA-directed RNA polymerase/ protein dimerization | 663 | 6e-070 |
| AT2G15400.2 NRPE3B; DNA binding / DNA-directed RNA polymerase/ protein dimerization | 663 | 6e-070 |
| AT1G60850.3 ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization | 163 | 5e-012 |
| AT1G60850.2 ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerization | 163 | 5e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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