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Information for unigene UN63998
| FASTA Sequence |
| Unigene ID: UN63998 | Length: 707 |
SSR | | GGACTCTCAACCCTATCTCTTCCTCCATGGCTGCTTCAGCTTCGTCCCTCGCTTCTCCACCTTCAACCCTAAATCCCTTCCTTTCT
CCATCCAGACCCGCCTCCACTCCCTTCCTCCCTCCTTCCCTCTCCTTCAAACTCAACCACCAATCCATTTCCCTCTCCGTCTCCGC
CGCGTCTCGCTTCGTCCGTAATGTTGCCGTCACAGATGACTTCAGCGTAGAAGAAGAAGATGGAGTTTTCTCCGATGACGCTCCTC
AGCAGCAGGAACAATCCTTCTCTGCTGACCTTAAACTCTTCGTCGGTAACCTCCCCTTCGACGTCGACAGTGCTCAGCTCGCTCAG
CTCTTCGAGAGCGCCGGAAATGTCGAGATGGTTGAGGTGATATATGACAAAGTGACAGGACGAAGCAGAGGTTTCGGGTTCGTGAC
AATGTCTTCAGTGTCTGAAGTTGAAGCAGCTGAGCAGCAGTTCAATGGCTATGAGTTAGATGGTAGAGCCTTGAGAGTTAATGCGG
GTCCTCCTCCACCGAAGAGGGAAGACTCCTTCTCCAGAGGACCCAGAAGCAGTTTTGGAAGCTCCGGTTCTGGATATGGTGGTGGT
GGTGGGTGGTGGTGCTGGTTCAGAAACCGTGTTTATGTCGGCAACCTATCTTGGGGAGTCGATGACATGGCTCTCGAGAGTTGTTC
GGGGAGCAGGAAAAGTAGC
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002881497 hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata] | 830 | 7e-087 |
| AAM66970 putative RNA-binding protein [Arabidopsis thaliana] | 819 | 1e-085 |
| NP_181259 ribonucleoprotein [Arabidopsis thaliana] | 815 | 4e-085 |
| XP_002281642 PREDICTED: hypothetical protein [Vitis vinifera] | 597 | 8e-060 |
| XP_002326357 predicted protein [Populus trichocarpa] | 549 | 3e-054 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 815 | 2e-086 |
| Q43349 29 kDa ribonucleoprotein, chloroplastic | 537 | 3e-054 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 509 | 6e-051 |
| Q08937 29 kDa ribonucleoprotein B, chloroplastic | 503 | 3e-050 |
| P49314 31 kDa ribonucleoprotein, chloroplastic | 501 | 5e-050 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L941 Putative RNA-binding protein | 819 | 1e-085 |
| Q7GA50 Putative RNA-binding protein | 815 | 3e-085 |
| B9MTC6 Predicted protein | 549 | 2e-054 |
| B9IFN7 Predicted protein | 509 | 9e-050 |
| B9S0K6 Ribonucleoprotein, chloroplast, putative | 498 | 2e-048 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 815 | 2e-087 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 537 | 3e-055 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 537 | 3e-055 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 278 | 3e-025 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 259 | 5e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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