Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN64669

FASTA Sequence
Unigene ID: UN64669Length: 765 SSR 
GGAGTAACATCTCACCTAATCTAATCTCTCAAAGATCTAAACTTTTAATCTCATTCTCCGATGTTCTTCTTCTTCTTCTGATCTCC
CCCAAAACAGAGAGAATGGTGGAACCACTTCCGATCACCAGGAGGCGATTCCTCTCATCCCACAGATCCCTCGTCACCGTTTTCTG
GATCGCAGCCTTCGCTTCCTTGTTCATCTGGCAATCCCGCGGCAGAGGAGGTTCCTCTCTCTATCGCGGTGGTGGCGGACTCTCCT
CTGTTTTCCGGTGGACGACGACGACACTACCAACAACTACCGCCGCCGGCGAGTTCCCTCGGCCTAGACCATTTGCTTTCAATCTC
ACTAGCTACATGACTCTGTTCCTCGCTGAGGATGCTGAGATCCTTGCTGTCCAGGATGAGACGTTATGGCCTCTGCTTCCTCCTTT
ACCTTCGTACGGCTATGGAAGAGAGCATTATGGACCTCGTTATGGAAGTTTCATTCATGGACAGAATCTCAAAGATGTCGTCGTCA
CTGGAAATAACGGAAGCATAAACGGGCAGGGAGTTTACTGGTGGAAGAAGTATCGCGCAAAGCTTCTAAACCACACAAGAGGACCA
CTTGTGCAGATCATGTGGTCAACTGACATTGTTTTCGCCAATATCACTCTCCGCGATTCTCCCTTTTGGACACTTCACCCATATGA
CTACAGAACGTCACAATCACAAACATGACCATCCTAGCACTGTCTTCGAAGCCCAACACTGATGGTATCGATCCTGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ABM30197 polygalacturonase [Brassica juncea]6372e-064
XP_002877258 glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata]6032e-060
NP_189881 Pectin lyase-like protein [Arabidopsis thaliana]5923e-059
AAN28906 At3g42950/F18P9_110 [Arabidopsis thaliana]5881e-058
XP_002324728 predicted protein [Populus trichocarpa]5574e-055

Swiss-Prot top hits (Blast detail)Scoree value
A7PZL3 Probable polygalacturonase3313e-030

TrEMBL top hits (Blast detail)Scoree value
A1Z1S2 Polygalacturonase (Fragment)6371e-064
Q9M1L0 AT3g42950/F18P9_1105922e-059
Q8H1N7 At3g42950/F18P9_1105887e-059
B9IND1 Predicted protein5573e-055
B9RR75 Polygalacturonase, putative5555e-055

Arabidopsis top hits (Blast detail)Scoree value
AT3G42950.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein5921e-061
AT1G19170.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein5429e-056
AT5G41870.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein3619e-035
AT4G23820.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein3573e-034
AT3G48950.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein3502e-033

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  100%

Unigene Members