Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN65173

FASTA Sequence
Unigene ID: UN65173Length: 722 SSR 
GGACCGCACCGTCGAAATCTCAGATCTCTCTCTCTCTCTCTCTCTATTTTCCTGTTTTGATAATTTTGCAGAAAGTTTTGATTTCT
CAATCCCCAATCTCTCTCTACCTATGGAGGATGTTACAATGAAGAACGCTGAGCTACACGAAGAAATCTCCGACAAGTTTCTCTGC
TGCGTCTGCCTGGAACTTCTTTACAAACCGATTGTGTTATCATGTGGTCACCTATCGTGTTTCTGGTGCGTGCATAAGTCAATGAA
CGAGCTGCGTGAGTCTCATTGTCCCATTTGTAGAGACCCTTATGTTCACTTCCCTGCTGTCTGCCAAAAGCTCCACTTCCTCCTCA
AGAAGATTTACCCTCTTGCCCACCACAAGAGAGAAGAACAAGTTCTAAAGGAGGAACAAGAACTAGAATGTTTTTCACCTCAGATT
GATGAACCAAAGCCTAAGCAAGAGTCTGTATCTAGTGGAGATGAGCAGAAGGTGGAAGAGTGCTCTAATAATGCAGGAAGTTTACT
ATCAAGTGAAGAACCTAAAGATGCAAAAGCTCTTGATGAGAATAATAAGCAAATTTCGAAAGATGATTTGCTCTGTTTAGCATGTA
AGGAGCTGCTTGTGCGACCCGTTGTTCTCAACTGCGGACATGTGTATTGTGAAGGATGTGTAGTAGATATGTTTCAAGAAGCGAAA
AGATCAATGTCAAGAGTGTCATATCTCTGACCCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_189124 E3 ubiquitin-protein ligase PRT1 [Arabidopsis thaliana]5718e-057
XP_002883562 hypothetical protein ARALYDRAFT_479998 [Arabidopsis lyrata subsp. lyrata]5574e-055
AAM64697 PRT1 [Arabidopsis thaliana]5521e-054
BAJ99683 predicted protein [Hordeum vulgare subsp. vulgare]4812e-046
XP_002521101 conserved hypothetical protein [Ricinus communis]4661e-044

Swiss-Prot top hits (Blast detail)Scoree value
Q8LBL5 E3 ubiquitin-protein ligase PRT15714e-058
Q5D7I6 Tripartite motif-containing protein 51262e-006

TrEMBL top hits (Blast detail)Scoree value
B9S532 Putative uncharacterized protein4669e-045
B8AFI4 Putative uncharacterized protein4632e-044
Q6K9N9 Os02g0621500 protein4632e-044
A9PEV7 Putative uncharacterized protein4022e-037
B9GQH3 Predicted protein (Fragment)4022e-037

Arabidopsis top hits (Blast detail)Scoree value
AT3G24800.1 PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase5714e-059
AT1G74990.1 zinc finger (C3HC4-type RING finger) family protein1289e-008
AT1G04020.2 BARD1 (BREAST CANCER ASSOCIATED RING 1); DNA binding / transcription coactivator1135e-006
AT1G04020.1 BARD1 (BREAST CANCER ASSOCIATED RING 1); DNA binding / transcription coactivator1135e-006
AT2G42030.1 zinc finger (C3HC4-type RING finger) family protein1118e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  100%

Unigene Members