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Information for unigene UN65344

FASTA Sequence
Unigene ID: UN65344Length: 600 SSR 
GGCCGAGAATCATCAAGGTTCTGAGAAAGGGAAAAGAAAAAATAACAAAAAGGAAAGGTGAGATCAGATCTAAGAAGAAGAAGAGG
AAGAAAGGTCGGAAGCAGATAACATGTCTGCGATTGTCTGCGGCAGCAAGAGATCTCTTTTCGACGATTTGTCCTCCGCTTCTTCT
TCTTCTTCGCCTCCCGTCTCCAAGAAACTCCGTCGCTTCTCCTCATCTTCTCCGCCTAGTTTCTCCTCCTCATCCCTCCTCCTCCT
CCATCACCTCGCGGCCCTTTTCCCCGATATGGATAATCAAATTCTTGAGCGGGCGATCGAGGAATGTGGTGACGATCTTGATTCTG
CGATTAGATCTTTGAATCAGCTTCGTTTAGAATCCACCAATAAGGATTCAGAAGAAGCAGGAGGAGGAGGATCGTCAAAGAAGGAG
GAAGTCTTGAACTTGGATGGTAACGAGTGGGTTGAGCTCTTTGTGAGGGAGATGATGAATGCTTCAGACATGAAAGACGCTAAAGA
CCGTGCTTCGAGAGCATTGCAAGCGTTGGAGAAGTCAATCAACGCACGTGCAGGTGCCGACGCAGAGACGCAGAGCAGTCTACA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002325204 predicted protein [Populus trichocarpa]3531e-031
XP_002868389 hypothetical protein ARALYDRAFT_493566 [Arabidopsis lyrata subsp. lyrata]3271e-028
NP_568521 Ubiquitin system component Cue protein [Arabidopsis thaliana]3233e-028
AAK43955 unknown protein [Arabidopsis thaliana]3233e-028
NP_001119304 Ubiquitin system component Cue protein [Arabidopsis thaliana]3233e-028

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
B9IMV5 Predicted protein3537e-032
B3H6U1 Uncharacterized protein At5g32440.23232e-028
Q8H1Q3 Putative uncharacterized protein At5g324403232e-028
Q94K99 Putative uncharacterized protein At5g324403232e-028
B9SME8 Putative uncharacterized protein2651e-021

Arabidopsis top hits (Blast detail)Scoree value
AT5G32440.1 LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80040.1); Has 303 Blast hits to 289 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 74; Fungi - 21; Plants - 93; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).3232e-030
AT5G32440.2 LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3232e-030
AT1G80040.1 unknown protein2783e-025
AT1G80040.2 unknown protein2783e-025

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  100%

Unigene Members