 |
Information for unigene UN68333
| FASTA Sequence |
| Unigene ID: UN68333 | Length: 728 |
SSR | | ACCTAAGTAAGTAGACTTAGTGCAGCTGCGTTAGTTCATTCCTAAATTCTATCTATCTATCTCTGCACAGGTTGGAAAAGCTCTGT
TTGATGGCCAACTACTTGACGTCCATTTCACTCGTTCATTTTACAAGCATATCTTGGGAGTTAAGGTCACGTACCATGATATTGAA
GCTATAGATCCCGATTACTATAAAGCCCTGAAATGGATGCTGGAGGTATATATATATATTGTAGATACCTTTGTGTTTTTTTTTTT
TATGTTTGTTTGGTCCGAAGCATTTGTTACTCATCTGTTCTTTATCTATAATGCAAAATGATATTAGCGATGTCCTAGATCTCACT
TTTAGCGTTGATGCTGATGAGGAAAAGCTAATACTGTATGAAAAAACGGAGGTAACTTGTTCAGCCCTTTTTAACAGTGTCTTTGA
AATAAAAATCTGTTTTGAAACATAAAAAAATATTGCAGGTGACTGACCATGAACTGATCCCTGGAGGCCGGAACATCAAAGTTACA
GAGGAGAATAAGCATGAATATGTAGACCTAATCGCCGAGCATCGATTAACCACAGCCATTCGTCCTCAGATAAATGCATTCCTGGA
AGGGTTTAGTGAGCTTATACTTAAAGATCTAATATCAATTTTTAACGACAAGGAACTGGAGTTATTAATAAGTGGTCTTCCTGATA
TCGACTGTAAGTTATCATACTCCTGTACCAAGAATTTCAT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002864007 predicted protein [Arabidopsis lyrata subsp. lyrata] | 374 | 6e-034 |
| XP_002527362 E3 ubiquitin protein ligase upl2, putative [Ricinus communis] | 369 | 2e-033 |
| XP_002301117 predicted protein [Populus trichocarpa] | 355 | 9e-032 |
| XP_002989307 ubiquitin-protein ligase, UPL1 [Selaginella moellendorffii] | 355 | 9e-032 |
| XP_002980952 ubiquitin-protein ligase, UPL1 [Selaginella moellendorffii] | 355 | 9e-032 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8GY23 E3 ubiquitin-protein ligase UPL1 | 316 | 1e-028 |
| Q8H0T4 E3 ubiquitin-protein ligase UPL2 | 315 | 2e-028 |
| Q9P4Z1 E3 ubiquitin-protein ligase TOM1-like | 249 | 9e-021 |
| Q7Z6Z7 E3 ubiquitin-protein ligase HUWE1 | 222 | 1e-017 |
| Q7TMY8 E3 ubiquitin-protein ligase HUWE1 | 222 | 1e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SMZ3 E3 ubiquitin protein ligase upl2, putative | 369 | 2e-033 |
| B9GN81 Predicted protein | 355 | 7e-032 |
| A5BAJ1 Putative uncharacterized protein | 346 | 7e-031 |
| C0PN06 Putative uncharacterized protein | 343 | 2e-030 |
| C5YNJ6 Putative uncharacterized protein Sb08g012560 | 341 | 3e-030 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G55860.1 UPL1 (UBIQUITIN-PROTEIN LIGASE 1); ubiquitin-protein ligase | 316 | 1e-029 |
| AT1G70320.1 UPL2 (UBIQUITIN-PROTEIN LIGASE 2); ubiquitin-protein ligase | 315 | 2e-029 |
| AT3G17205.1 UPL6 (UBIQUITIN PROTEIN LIGASE 6); ubiquitin-protein ligase | 177 | 2e-013 |
| AT3G17205.2 UPL6 (UBIQUITIN PROTEIN LIGASE 6); ubiquitin-protein ligase | 177 | 2e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
| Unigene Members | |
 |
|
|
