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Information for unigene UN70418
| FASTA Sequence |
| Unigene ID: UN70418 | Length: 768 |
SSR | | ACCTAAAACCTTTGTTTTCATCAGATTCTCTCCAAACCTCAAGAGCTTCATATGCCCAAAACCCTAGCAACGGAGCCTTCTCGAAA
CACCTTAGACCCAGCTCTCCTAGCTCTCACGCCTCGCCAAGTGTTGATCTCTAGACCTGTTATCATGGCGAAAGCGAGCAAAGCCT
TGAGCTTGAAATCGGAGCAGAAGGCTGTCCTTCTCCGCTCGATAGCTCAGTACTTGGACCGATGTGGGTTTTCTAAATGCTTCAAG
AAACTCCTCTCCGAAGCCGAAATCGAGAAGAAGGAGTTGGATAGTGCAATACCGGATTTGGAGGAAGTTTACGGCGTGTTTTTGAA
CAAGAGCAATCTAGAAGCTGTGGAGGTGAAAGATGAAGTGGAGAAGAATGCATCTGATGATCAAAAGAAAGAAGATGCAGAGGAAG
TAAAGAAGGAGAAAAAGAAGAAGAAGACGGTGGAGGTAACTAAGGAGGAGAAGGTTAAAGAGACTGATGGTGAGATTGAAGATGGG
GTTAAAGAGAAGAAGAAGAAGAACAAGAAGGAATCGAAAGTGGAGGTAGCTAAAGAGGAGAAGGTCAAAGAAACTGATGGTGAGAT
AGAAGATGGAGTGAAAGAGAAAGAGAAAAAGAAGAAGAAGAAGACCAAGTCAAAAGCTGCCGAGGCTGAGACTTTGGGTGATGAGG
AGAGAGTTCCAGAGAGAAAAGATCAGAGCCTGAGAGAGACAAAGACAGACAGAGATGATGATGATGATGATGATGAGGAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_200522 uncharacterized protein [Arabidopsis thaliana] | 546 | 8e-054 |
| AAM61154 unknown [Arabidopsis thaliana] | 542 | 2e-053 |
| XP_002866185 hypothetical protein ARALYDRAFT_495806 [Arabidopsis lyrata subsp. lyrata] | 424 | 1e-039 |
| XP_002259813 hypothetical protein, conserved in P. knowlesi [Plasmodium knowlesi strain H] | 224 | 2e-016 |
| CBZ55484 conserved hypothetical protein [Neospora caninum Liverpool] | 221 | 4e-016 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q55FI4 Nucleolar protein 58 | 194 | 2e-014 |
| A5E4P1 Protein PXR1 | 184 | 3e-013 |
| P36044 Protein MNN4 | 182 | 6e-013 |
| O67825 Translation initiation factor IF-2 | 168 | 2e-011 |
| O96923 Gelsolin-related protein of 125 kDa | 161 | 2e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LU74 AT5g57120/MUL3_6 | 546 | 5e-054 |
| Q8LFX8 Putative uncharacterized protein | 542 | 2e-053 |
| B3L857 Putative uncharacterized protein | 224 | 1e-016 |
| B3L1M2 Ran binding protein 1 homologue, putative | 210 | 5e-015 |
| B9PJF5 Putative uncharacterized protein | 206 | 1e-014 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G57120.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 90949 Blast hits to 45608 proteins in 1620 species: Archae - 300; Bacteria - 8281; Metazoa - 37603; Fungi - 8095; Plants - 3374; Viruses - 548; Other Eukaryotes - 32748 (source: NCBI BLink). | 546 | 3e-056 |
| AT5G60030.1 unknown protein | 167 | 3e-012 |
| AT3G28770.1 unknown protein | 165 | 5e-012 |
| AT1G56660.1 unknown protein | 158 | 3e-011 |
| AT3G57150.1 NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase | 157 | 4e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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