RadishBase

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Information for unigene UN70805

FASTA Sequence

Unigene ID: UN70805	Length: 279	SSR
GGACATTCGACACTTCCCATTCTCTTCCTCTCTCAAATTTGTGTTCATTTACTTGTTTCTCTCTCTCTCTCTCTAGAATCATGGGA ATCATGGATGACAGTAGCAAGACACTATGGGGAAGCATGAACCTAAGTTCTTCACGTTACGCTCTTAACGGCAAAATCATGCTCGC TTCCGTTATCATCCTCTTCCTCGCCGTCATCTTCATCCTCTGTTTCCACATCTACGCCAGATGGTTATTCCGACGTCAAAACCGTC GTATTCGCCGCCGTATCACTG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_191828 RING-H2 finger protein ATL5 [Arabidopsis thaliana]	280	1e-023
AAD33583 RING-H2 zinc finger protein ATL5 [Arabidopsis thaliana]	280	1e-023
XP_002878471 hypothetical protein ARALYDRAFT_907844 [Arabidopsis lyrata subsp. lyrata]	280	1e-023
XP_002882123 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]	254	1e-020
NP_182278 RING-H2 finger protein ATL64 [Arabidopsis thaliana]	253	2e-020

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LZJ6 RING-H2 finger protein ATL3L	280	5e-025
O22255 RING-H2 finger protein ATL2N	253	7e-022
Q8L9T5 RING-H2 finger protein ATL3F	128	2e-007

TrEMBL top hits (Blast detail)	Score	e value
Q0WRF5 RING-H2 zinc finger protein ATL5	280	1e-023
C6TE62 Putative uncharacterized protein (Fragment)	141	1e-007
B9RT88 Ring finger protein, putative	133	1e-006
Q4FE42 At3g16720	128	4e-006
B9HXR4 Predicted protein (Fragment)	127	5e-006

Arabidopsis top hits (Blast detail)	Score	e value
AT3G62690.1 ATL5 (ATL5); protein binding / zinc ion binding	280	4e-026
AT2G47560.1 zinc finger (C3HC4-type RING finger) family protein	253	5e-023
AT3G16720.1 ATL2; protein binding / zinc ion binding	128	2e-008

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	1			100%

Unigene Members