Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN70964

FASTA Sequence
Unigene ID: UN70964Length: 781 SSR 
GGGAACATCAACACAAGAACAACACACATTTGTCCAAAAGTTTCGTTTCAAAGACTGTCTCTGGTTGCTCAAAAAAAAAAAAAAGA
CTCTCTGCCTTCAAGAAATCAACGATTCAGAGTATTTTCTATCAGCATTGAGAGAGAGATGTCTGATCATCTGAGTTCATGTACCG
ACCGTCTCGTTACATCTGATCACCTTAATTCAGATAAAGTATCCAATCAATCTTCTAGAGAAAGTTCCAGAGCTCAAGACACCACC
ACTACTAAACCTGTAGATGATAAGGAAGAAAGCGATGAAGAGGAGGAGCCGCTTATCCAACAATCAGTTGAATGCCGTATTTGCCA
AGAGGAGGATTCTGTTAAGAACCTCGAGTCTCCGTGTTCTTGCAGCGGCAGCTTGAAGTATGCTCATAGGAAGTGTGTTCAGCGTT
GGTGTAATGAGAAAGGCGATACCATCTGTGAAATATGTCACAAGTCTCATCAACCTGGCTACACAGCTCCACCGCCTCCTCCTCCT
CCTGATGATACCGTTATCGATATTGGGTAACGTTTTCTTAATCCATGTCACTTGTGCTTTCATATAGCAAAGTTACATTTCAATCC
AAGAAAACGTTTGTGCTATCAGTGAAGATTGGGCTAATGGTGTGCTCTTAGACCTGAACGACCCGCGCATTTTGGCAATGGCGGCT
GCTGAACGCCACTTCTTTGATGCGGACTATGATGAGTACGCTGATACAACTCTAGTGGAGCTGCGTTTCTTCGCTCCGCTGCTCTA
TCTAATG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002875846 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]4803e-046
ADA67984 RING-type E3 ubiquitin ligase [Brassica napus]4642e-044
NP_850668 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]4581e-043
NP_850667 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]4581e-043
NP_190339 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]4581e-043

Swiss-Prot top hits (Blast detail)Scoree value
Q32L65 E3 ubiquitin-protein ligase MARCH21396e-008
A0JN69 E3 ubiquitin-protein ligase MARCH31396e-008
Q86UD3 E3 ubiquitin-protein ligase MARCH31396e-008
Q8BRX9 E3 ubiquitin-protein ligase MARCH31396e-008
Q5XIE5 E3 ubiquitin-protein ligase MARCH31396e-008

TrEMBL top hits (Blast detail)Scoree value
D2KC47 RING-type E3 ubiquitin ligase4642e-044
A9CEI2 Uncharacterized protein At3g47550.24589e-044
Q3E6V0 At3g475504589e-044
Q9SN83 Putative uncharacterized protein At3g475504589e-044
Q9FJJ6 AT5g62460/K19B1_74426e-042

Arabidopsis top hits (Blast detail)Scoree value
AT3G47550.3 zinc finger (C3HC4-type RING finger) family protein4585e-046
AT3G47550.2 zinc finger (C3HC4-type RING finger) family protein4585e-046
AT3G47550.1 zinc finger (C3HC4-type RING finger) family protein4585e-046
AT3G47550.6 zinc finger (C3HC4-type RING finger) family protein4585e-046
AT5G62460.1 zinc finger (C3HC4-type RING finger) family protein4424e-044

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  100%

Unigene Members