Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN71011

FASTA Sequence
Unigene ID: UN71011Length: 625 SSR 
CAATTGGGAATTGCGATTCTCTATTTACCGTTTTGTCCGCTCTCTCTCTCTCTCTCTCTCTGAACTTCAGAGTCTGAACCCTAGAT
TTCCTCTGGAGCTAAGATTGAGAAACTCAAAGCTTGTTTGTTTCTTATGAGTGATTCAACGATGATCATAGACGAGACGAATCGAA
AGAATCTCATCTTCCTCATCTTACAGTTCCTTCACGAAGAGGGCTATTTGAAAAGCTTACACTTACTGGAGCAGGATTCAGGGGTT
TTCTTTGATTATAGCTACTTTTCTGGTTTTATTACCAATGGTAACTGGAGAGACGCAGAGGACTACCTTTCAGCATTCACTAGTCC
AGATGCTAATACTTTCTCAAGGAAGATGTTCGTTGACTTGTACAAGTGGAAGTTTTCTGAAGCAGCTCATAGTGGTGGCTCTGAAT
CTGTGAACATTTTCTCCAAGGATTTGAGACGGATTCCTGTTTTCAAAGATGATGGCTTTGAGGATTTGGTTAACGTGATTGCCGTA
GAAGATATAAGAATTCCTGAGAAAACTGGGAGCGTGGATAAAGCATTGGTTAGAGCTAGTTTGTGTGTTGAACTCCGCAAACTAGC
AGAAAGCAACCCTTCTTTATGTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_565594 transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]6065e-061
XP_002878852 hypothetical protein ARALYDRAFT_901180 [Arabidopsis lyrata subsp. lyrata]5393e-053
AAD20702 hypothetical protein [Arabidopsis thaliana]3432e-030
XP_002327405 predicted protein [Populus trichocarpa]2884e-024
AAN62336 CTV.2 [Citrus trifoliata]2867e-024

Swiss-Prot top hits (Blast detail)Scoree value
Q94AI7 Protein TOPLESS2846e-025
Q0WV90 Topless-related protein 12846e-025
Q9LRZ0 Topless-related protein 22641e-022
Q84JM4 Topless-related protein 32578e-022
Q27GK7 Topless-related protein 42542e-021

TrEMBL top hits (Blast detail)Scoree value
Q0WVR3 Putative uncharacterized protein At2g254206064e-061
Q9SKK7 Putative uncharacterized protein At2g254203431e-030
B9MWM2 Predicted protein2883e-024
B9HAH3 Predicted protein2865e-024
Q8H6S5 CTV.22865e-024

Arabidopsis top hits (Blast detail)Scoree value
AT2G25420.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT3G15880.2); Has 2557 Blast hits to 2036 proteins in 230 species: Archae - 2; Bacteria - 361; Metazoa - 924; Fungi - 399; Plants - 275; Viruses - 0; Other Eukaryotes - 596 (source: NCBI BLink).6063e-063
AT1G80490.1 TPR1 (TOPLESS-RELATED 1)2846e-026
AT1G15750.1 TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor2846e-026
AT1G15750.2 TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor2846e-026
AT1G80490.2 TPR1 (TOPLESS-RELATED 1)2846e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  100%

Unigene Members