Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN71565

FASTA Sequence
Unigene ID: UN71565Length: 573 SSR 
GGAGAGAAGCACTTTGTGAGAGAGAGAGAGAAAAACCCGCGGAGGATGACGATGTCCGTCGCGGCGGTAGAGCAGTTGCGCAGAAA
GAAGAAGAAGAGGAGAAGGGTTGAGTCTCCATCATCATCATGTAGTAGGTTAATGTCTTTGCCATATGACATGGTTCAAAACTGCT
TGGCCCGCGTGTCTAGATCCGACCTAGGGGCCTTATCTCTGGTGTCAAAGAGCATCCACTCACTGGTGGCTTCGCCGGAGATGTAC
GAGACCCGATCTCGAATGGGTTTGAGGGAAGATTACATCTACGTATGCTTGGGAACTAATTTTGGCACAATTACAAATCCTCTGGG
ATGGTTCATCCTCAGAAAAGGAAGAAAAGGGAATAATAGGCTGATCCCAATCCCGATCCCTTCGTTCCCATCTCCGCGTAGAGCTA
CCTATGTCTCCATGGGATGTGGGATCTATGTAATTGGAGGAAGGATAGAAGCCGTGAAGACATCGCGTGTCTCCTTCCTGGATTGT
CGGACTCACACGTGGAGCGAGCTCCCCTCCATGAGGTTTGCTCGCTGTGAAGCCAAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002866962 hypothetical protein ARALYDRAFT_912622 [Arabidopsis lyrata subsp. lyrata]3717e-034
XP_002868960 hypothetical protein ARALYDRAFT_912541 [Arabidopsis lyrata subsp. lyrata]3573e-032
XP_002868919 hypothetical protein ARALYDRAFT_912437 [Arabidopsis lyrata subsp. lyrata]2992e-025
XP_002871008 hypothetical protein ARALYDRAFT_908166 [Arabidopsis lyrata subsp. lyrata]2973e-025
XP_002868914 hypothetical protein ARALYDRAFT_912422 [Arabidopsis lyrata subsp. lyrata]2946e-025

Swiss-Prot top hits (Blast detail)Scoree value
Q9SV98 Putative F-box/kelch-repeat protein At4g396003024e-027
O80573 Putative F-box/kelch-repeat protein At2g440303007e-027
Q67XN8 F-box/kelch-repeat protein At4g395602917e-026
Q9FI70 F-box/kelch-repeat protein At5g490002901e-025
Q9LYY5 Putative F-box/kelch-repeat protein At5g030002801e-024

TrEMBL top hits (Blast detail)Scoree value
Q3ED92 Putative uncharacterized protein At1g19930.12632e-021
Q4ABZ3 117M18_272587e-021
Q6NL02 At5g395602497e-020
Q9FKA6 Emb|CAB79695.12443e-019
B9HFY5 Predicted protein2381e-018

Arabidopsis top hits (Blast detail)Scoree value
AT4G39600.1 kelch repeat-containing F-box family protein3024e-028
AT2G44030.1 kelch repeat-containing F-box family protein3007e-028
AT4G39560.1 kelch repeat-containing F-box family protein2917e-027
AT4G39560.2 kelch repeat-containing F-box family protein2917e-027
AT5G49000.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39550.1); Has 5235 Blast hits to 3308 proteins in 165 species: Archae - 10; Bacteria - 167; Metazoa - 4114; Fungi - 13; Plants - 659; Viruses - 110; Other Eukaryotes - 162 (source: NCBI BLink).2901e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  100%

Unigene Members