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Information for unigene UN71910

FASTA Sequence
Unigene ID: UN71910Length: 713 SSR 
GAGACTGAGAAAAAGTTGGAAGAATCAACAAAATAACAAACTTGGTGCACAAGTATCGATACCAAAGGTGTTTACCTCTTAACCCT
AACTTCTAATCAAACAATTTTGAGTTGCACACGGAGGTTACATATTATGATAAAACAACTTATCCACATCGAGAAGAAAACGACAC
AGCTGACGCAATGACACAGAGATAGATAGAGAGAGAGAGAAAGAGAGTTTAGTTGTTTTTAAATTAAGGAAACCCTACACGAAATT
TGCAGTTTGATATTCCTCCTCCTCCACTGCAGATCAATCGATAAGGAAACGACTAGTACTAGATTCCGTTGACTCGATAGGCTGTT
ACTTTCAGGACGAAATCTCTGGTTCCCAGCAGCTCGAACACACAGACATCACCTTCTCCGAGGTTGTTCTCCAGGGTGAACTCGTA
CCATCCTTGGCTGAACTTGGTCCTCCCTGCTTTGTAAAGGCATCTCACTGGCCACTGTTTCTCACCCAGCTGGACCTTGATGAACC
CCGAGATCCCACTTAAGTACTTCTCAGCAAAACCAGAAGGCAGATACATGATGCAGCCTCTGTATAGATAAGATGGTCGGAGAACA
ACTCTGAAGAAAGGGTTTGTTGGCTCGAACGTTTTGGCTGCATTGATGGCCCTCTCTCTTTCTTCTGCAGTCACCGTTCTCTTTCT
CGCAGAAGCACTCTCGTAGAACTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAR92199 reduced vernalization response 1 [Brassica rapa]6595e-067
BAJ34322 unnamed protein product [Thellungiella halophila]6595e-067
BAB01695 unnamed protein product [Arabidopsis thaliana]6587e-067
NP_188529 B3 domain-containing transcription factor VRN1 [Arabidopsis thaliana]6587e-067
XP_002885287 hypothetical protein ARALYDRAFT_479415 [Arabidopsis lyrata subsp. lyrata]6587e-067

Swiss-Prot top hits (Blast detail)Scoree value
Q8L3W1 B3 domain-containing transcription factor VRN16583e-068
Q9XIB5 B3 domain-containing protein REM196512e-067
Q8S2E6 B3 domain-containing protein Os01g07235001512e-009
Q2QMT2 B3 domain-containing protein Os12g05923001422e-008
Q851V5 Putative B3 domain-containing protein Os03g06216001216e-006

TrEMBL top hits (Blast detail)Scoree value
Q6R2U8 Reduced vernalization response 16594e-067
Q6V0J6 Reduced vernalization response 16522e-066
B9RZH6 DNA binding protein, putative5601e-055
B9N4T6 Predicted protein (Fragment)5563e-055
B9NJ20 Predicted protein (Fragment)5502e-054

Arabidopsis top hits (Blast detail)Scoree value
AT3G18990.1 VRN1 (REDUCED VERNALIZATION RESPONSE 1); transcription repressor6583e-069
AT1G49480.1 RTV1 (related to vernalization1 1); DNA binding / transcription factor6512e-068
AT4G33280.1 DNA binding / transcription factor1144e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  100%

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