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Information for unigene UN72213
| FASTA Sequence |
| Unigene ID: UN72213 | Length: 569 |
SSR | | GTCACCGGAGCGTATTCGTTCTCTCTGTCTCCGCCTCTCTCTCTCTCTCTCGGGCTTCACGGTTTGTTCAGTCTCGAAGATGTCGT
TGACGGAGCTAGACGACGGAATGGTACGAAGGATGGCCATAGGAGCAGTCTTCTCCGATTTCGGGGGGAAGATACGTTCGGTGGGG
TTCCATAGGACTGATGATCTACTAGTAACATCTAGCGAGGACGATTCACTACGCCTCTTCGATATCGCCAACGCTAAACAGGTGAA
GATTACATACCATAAGAAACATGGCACGGATCGTGTATGCTTTACACATCATCCCAGCTCTCTTATTTGCTCTTCTCTTTACAATC
TTGAGTCCACTGGAGAATCTTTGAGATATCTCTCAATGTACGATAATAGGATTCTTCGCTACTTTAAAGGCCACAAAGACAGGGTT
GTATCCCTTTGTATGTCTCCTATTAATGATAGCTTCATGTCTGGTTCTCTCGACCGAAGTGTCCGACTCTGGGATCTTCGTGTTAA
TGCCTGCCAGGGAATTCTACACCTACGTGGGAGACCTGCAGTAGCTTATGACC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_196957 transducin/WD40 domain-containing protein [Arabidopsis thaliana] | 831 | 3e-087 |
| XP_002873674 transducin family protein [Arabidopsis lyrata subsp. lyrata] | 830 | 4e-087 |
| ACU24025 unknown [Glycine max] | 746 | 2e-077 |
| XP_002324005 predicted protein [Populus trichocarpa] | 738 | 2e-076 |
| XP_002521457 COMPASS component SWD2, putative [Ricinus communis] | 730 | 2e-075 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q58E77 WD repeat-containing protein 82-B | 361 | 6e-034 |
| Q640J6 WD repeat-containing protein 82-A | 358 | 1e-033 |
| Q6GL39 WD repeat-containing protein 82 | 358 | 1e-033 |
| Q6NV31 WD repeat-containing protein 82 | 354 | 4e-033 |
| Q6UXN9 WD repeat-containing protein 82 | 353 | 5e-033 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q9LYK6 At5g14530 | 831 | 2e-087 |
| C6TM83 Putative uncharacterized protein | 746 | 2e-077 |
| B9IJM4 Predicted protein (Fragment) | 738 | 1e-076 |
| B9S638 COMPASS component SWD2, putative | 730 | 1e-075 |
| B9GI53 Predicted protein (Fragment) | 722 | 1e-074 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT5G14530.1 transducin family protein / WD-40 repeat family protein | 831 | 2e-089 |
| AT5G66240.1 transducin family protein / WD-40 repeat family protein | 422 | 5e-042 |
| AT5G66240.2 transducin family protein / WD-40 repeat family protein | 422 | 5e-042 |
| AT5G08390.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G23430.1); Has 84267 Blast hits to 30722 proteins in 748 species: Archae - 68; Bacteria - 7813; Metazoa - 39755; Fungi - 16342; Plants - 8110; Viruses - 6; Other Eukaryotes - 12173 (source: NCBI BLink). | 130 | 3e-008 |
| AT5G23430.1 transducin family protein / WD-40 repeat family protein | 128 | 6e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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