Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN72705

FASTA Sequence
Unigene ID: UN72705Length: 739 SSR 
GGATTGTCGTCTTCCTCTCGCTCGCTGCTACCGTCTCTCACGATGCCGAGGTATTACTGTGATTATTGTGACACTTATCTCACCCA
CGACTCCCCATCCGTGAGGAAGCAGCACAATTCTGGTTACAAACACAAGGCGAATGTAAGAACATACTATCAGCAATTTGAGGAAC
AGCAAACCCAAAGTCTGATTGATCAGAGAATTAAAGAGCATCTTGGCCAAACTGCAGCGTACAATCAGGTTGGTGCTGTGTTTAAT
CAGCATATGCTCGCTAGACCTCGCCTTCCTATGATGCCTATGCCTATGGGGATGCGACCTCCTATTCTGCCTAGACCCATGATGCC
TGGTCAAGGTTACATGCCTCCTCCAGGAGTACCACAGATGATGGCACCACCTGGCGGTCCTCTACCACCACCACCTCCACAAAATG
GTATTCTTAGGCCACCAGGATTGGCTCCAATACCAGGTCAAGGTGGTGCGCCACCTCCCAATTACACTGGACTTCCTCCTCCTCCT
CCTTATCATACAAATCCAGCTGCTGCTGCTCCACCAAGTGTTGGCTTCAACAATCCGAACCCTGGTGCTGAATCTCCTGAAACCAA
TGAGTAGAGTTTAGGTCTGATGAGTTATTTTTCTTCTGTCAAAAAAACGCTGAGGACTCATTTTTTAACACAGTTTTTTTTTTTTT
TTACCTTTTCTAATGTAATACATGCAAAGAGGTTTAGAGTATGTATGTGAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874880 hypothetical protein ARALYDRAFT_911890 [Arabidopsis lyrata subsp. lyrata]8943e-094
NP_567250 C2H2 and C2HC zinc finger-containing protein [Arabidopsis thaliana]8836e-093
AAO44073 At4g03120 [Arabidopsis thaliana]8782e-092
NP_001046503 Os02g0266100 [Oryza sativa Japonica Group]5314e-052
EAY85293 hypothetical protein OsI_06664 [Oryza sativa Indica Group]5314e-052

Swiss-Prot top hits (Blast detail)Scoree value
P09234 U1 small nuclear ribonucleoprotein C2902e-025
Q62241 U1 small nuclear ribonucleoprotein C2883e-025
Q32PA0 U1 small nuclear ribonucleoprotein C2865e-025
Q03369 U1 small nuclear ribonucleoprotein C2802e-024
Q54YA5 U1 small nuclear ribonucleoprotein C2434e-020

TrEMBL top hits (Blast detail)Scoree value
Q56XE4 Putative C-type U1 snRNP8834e-093
Q84VV2 At4g031208782e-092
A2X383 Putative uncharacterized protein5313e-052
Q6ETX3 Os02g0266100 protein5313e-052
Q9ZR19 Putative C-type U1 snRNP5133e-050

Arabidopsis top hits (Blast detail)Scoree value
AT4G03120.1 proline-rich family protein8842e-095
AT4G13340.1 leucine-rich repeat family protein / extensin family protein1574e-011
AT1G70460.1 protein kinase, putative1521e-010
AT1G61080.1 proline-rich family protein1521e-010
AT1G44191.1 Encodes a ECA1 gametogenesis related family protein1451e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  100%

Unigene Members