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Information for unigene UN72771
| FASTA Sequence |
| Unigene ID: UN72771 | Length: 694 |
SSR | | GGGAAAATTCTGGTGGAGAAAACTCTAAAAACCCGTTAGTGTTAGTGGTAGAAGAGTGTTTGGTGCAACCGCTAAAGTGGAAGCTC
CAAAAGAGTCTAAAAAGGATTCAGATAACTTTTACGACAACAGTGATAGTGACAATGATATGGCTGGCGTAGAAGATAACGACATG
CAGGATGTAAGAGATAATGCCTCACCTGCTAGAAACACTGGAACCATTACAGAAACTGAGAAGTTTGATGATGTTGCACCTAAGAC
AACATTCGATGTTGCCATGTTTGCATCAGGCTCCTGGAAGAAGATGGCAAGCTGCAAAAACACAGAATCCAAAATGAGTCAAAGAA
GACACGTGCACCCATCTCACAGTCTCAAGATAAAAAGGGATCAAGAGATGAAGAAAGTGAGGATTCAGAGAGTGAAGCAGAGGAAA
TGGTGGACGGAGTTTTGGCATCTGCGTCAAAGGAAACCTTTGAGATTCCTTCTCAAGCAGAGCTTATAAACCGGGCTTTTGCTGGT
GATGATGTGTTGGATGAATTTGAGAAGGATAAGGAAGAGGTTCTGAATCAGGAAGTTCCTAAACCCGAAAAACCTGTTCTACTTCC
TGATTGGGGAGATTGGTGCAATGTCCAAAGAAAGAGAGGTATATCTAAACGGATGGTTATGGAACACGAAGCTGAGGAGAGAGAGA
GAGAGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAC19284 T14P8.20 [Arabidopsis thaliana] | 468 | 7e-045 |
| BAF02036 hypothetical protein [Arabidopsis thaliana] | 468 | 7e-045 |
| NP_567232 U3 ribonucleoprotein-like protein [Arabidopsis thaliana] | 468 | 7e-045 |
| XP_002874917 hypothetical protein ARALYDRAFT_490329 [Arabidopsis lyrata subsp. lyrata] | 467 | 9e-045 |
| NP_196477 U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana] | 404 | 2e-037 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P87137 Uncharacterized protein C57A7.06 | 147 | 5e-009 |
| Q04500 U3 small nucleolar RNA-associated protein 14 | 126 | 1e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O81293 AT4g02400 protein | 468 | 5e-045 |
| Q0WLH1 Putative uncharacterized protein At4g02400 | 468 | 5e-045 |
| Q9FNM8 Genomic DNA, chromosome 5, P1 clone:MAH20 | 404 | 1e-037 |
| B9SAS6 U3 small nucleolar RNA-associated protein, putative | 331 | 4e-029 |
| B9GSB2 Predicted protein (Fragment) | 313 | 4e-027 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G02400.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.1); Has 7412 Blast hits to 4272 proteins in 301 species: Archae - 10; Bacteria - 517; Metazoa - 2926; Fungi - 722; Plants - 242; Viruses - 149; Other Eukaryotes - 2846 (source: NCBI BLink). | 468 | 3e-047 |
| AT5G08600.1 U3 ribonucleoprotein (Utp) family protein | 404 | 8e-040 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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