RadishBase

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Information for unigene UN72822

FASTA Sequence

Unigene ID: UN72822	Length: 783	SSR
ATTCGTCTTCTTTGTATGGGTCCCCACCCCAGCTTACGCACAGTAATTTGAAAACTCCTTTCTCGGCGTATCTGAGATCGTTCCGG CTAGCTTGATCCAATCCGGAGGAATCATGGCTCCGGTGTCGGCGCTGGCCAAGTATAAGCTGGTGTTTCTGGGAGATCAATCCGTG GGAAAGACGAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACTTACCAGGCCACGATCGGTATTGATTTTCTATCAAA GACAATGTACCTTGAAGACCGAACTGTCAGGCTGCAGCTATGGGATACAGCTGGGCAAGAGAGGTTCAGGAGTCTTATTCCGAGTT ACATTAGGGACTCTTCTGTTGCTGTTATTGTCTATGATGTTGCAAGCAGGCAATCCTTCCTAAACACTACTAAGTGGATCGATGAG GTTAGGACCGAGCGTGGTAGTGATGTCATTGTTGTACTTGTGGGAAATAAAACCGACCTTGTGGACAAAAGGCAAGTGTCGATAGA GGAAGCAGAAGCTAAGGCTCGTGAGCTTAATGTAATGTTTATCGAAACCAGTGCCAAAGCAGGCTTCAACATAAAGGCGCTTTTCC GTAAGATAGCAGCAGCTTTGCCAGGAATGGAAACACTGTCTTCGACAAAGCAAGAGGACATGGTTGATGTCAATCTCAAATCTTCC AATGCAAATGCATCTTTGGCTCAACAGCAATCAGAGGATGCTCTTGTTAGACAACAACAAACACACACACACACACACACACAAAC TCCTCGAGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_181989 Ras-related protein RABH1B [Arabidopsis thaliana]	998	3e-106
XP_002526504 protein with unknown function [Ricinus communis]	963	3e-102
XP_002302484 predicted protein [Populus trichocarpa]	961	6e-102
AAA74117 putative [Nicotiana tabacum]	954	4e-101
XP_002266653 PREDICTED: hypothetical protein [Vitis vinifera]	954	4e-101

Swiss-Prot top hits (Blast detail)	Score	e value
O80501 Ras-related protein RABH1B	998	1e-107
Q9SMR4 Ras-related protein RABH1C	785	7e-083
P20340 Ras-related protein Rab-6A	774	1e-081
P35279 Ras-related protein Rab-6A	774	1e-081
Q5RAV6 Ras-related protein Rab-6A	774	1e-081

TrEMBL top hits (Blast detail)	Score	e value
B9SKH4 Putative uncharacterized protein	963	2e-102
B9GP45 Predicted protein	961	4e-102
Q40525 Nt-rab6 protein	954	3e-101
A5BUZ6 Putative uncharacterized protein	944	4e-100
Q8H4Q9 GTP-binding protein Rab6	939	1e-099

Arabidopsis top hits (Blast detail)	Score	e value
AT2G44610.1 RAB6A; GTP binding / protein binding	998	1e-108
AT5G10260.1 AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding	884	2e-095
AT2G22290.1 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding	842	2e-090
AT4G39890.1 AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding / protein binding	785	6e-084
AT5G64990.1 AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding	727	3e-077

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			100%

Unigene Members