RadishBase

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Information for unigene UN72947

FASTA Sequence

Unigene ID: UN72947	Length: 835	SSR
GGACGACTCTCAAATCTGCACCTGAAAAATCTCAAACTCTCAGATCTGCTAGCACCTCTCTTATCGTGACGGTGAAGAGAGAGAGA GAGATCTCTCGAGAGCCAGAAAAAAATGGCGGCGGTGACACCATTAGCAAAGTTCAAGCTCGTCTTCCTGGGAGATCAATCCGTCG GCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACCTATCAGGCAACGATTGGGATTGATTTCTTGTCAAAG ACAATGTACCTTGAGGATAGGACTCTTCGTCTCCAGCTTTGGGATACTGCCGGGCAGGAAAGGTTTCGAAGTCTGATACCAAGTTA TACCAGAGATTCCTCTGTTGCTGTCATTGTCTATGACGTTGCTAATAGGCAGTCGTTCTTGAACACCTCGAAGTGGGTCGAGGATG TTCGTACAGAGAGAGGTAACGATGTCATAATTGTTCTGGTGGGTAACAAAACTGATCTCGTTGACAAGAGGCAAGTGTCGATAGAG GAAGGGGATAACAAAGCTCGTGATTTTGGAGTTATATTCATAGAGACGAGTGCAAAAGCAGGATTTAACATCAAGCCACTATTCCG GAAGATTTCGGCAGCATTACCAGGAATGGATACACTTTCTTCAGCGAAACAAGGCGATATGGTTGATGTTAACCTTAAGTCATCGA TCCATTCGTCTAATGTGGAGCAACAAAGTGGTGGCTGTTCGTGCTGATTAATCTTTACTAAAAAATATATACTTTTACAGCACAGA GTATGGAGATTTTAAAATGATTCATACTTGATGGAGTAAATAACTCTGTGTAAGTAGAGAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002871412 hypothetical protein ARALYDRAFT_487852 [Arabidopsis lyrata subsp. lyrata]	964	3e-102
AAZ67607 80A08_22 [Brassica rapa subsp. pekinensis]	961	7e-102
NP_196588 RAB GTPase H1E [Arabidopsis thaliana]	957	2e-101
XP_002307084 predicted protein [Populus trichocarpa]	948	2e-100
XP_002531261 protein with unknown function [Ricinus communis]	948	2e-100

Swiss-Prot top hits (Blast detail)	Score	e value
O80501 Ras-related protein RABH1B	881	6e-094
Q9SMR4 Ras-related protein RABH1C	829	6e-088
P20340 Ras-related protein Rab-6A	742	7e-078
P35279 Ras-related protein Rab-6A	742	7e-078
Q5RAV6 Ras-related protein Rab-6A	742	7e-078

TrEMBL top hits (Blast detail)	Score	e value
Q4ABP5 80A08_22	961	5e-102
Q9LFT9 GTP-binding protein	957	1e-101
B9H4T8 Predicted protein	948	1e-100
B9SZ42 Putative uncharacterized protein	948	1e-100
A9NSV9 Putative uncharacterized protein	924	9e-098

Arabidopsis top hits (Blast detail)	Score	e value
AT5G10260.1 AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding	958	6e-104
AT2G22290.1 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding	890	5e-096
AT2G44610.1 RAB6A; GTP binding / protein binding	882	4e-095
AT4G39890.1 AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding / protein binding	830	4e-089
AT5G64990.1 AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding	758	9e-081

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			100%

Unigene Members