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Information for unigene UN74004

FASTA Sequence
Unigene ID: UN74004Length: 627 SSR 
CTGGAATGTTTTTTATATATAAATAAACCAAACACACAAATTAAAGTCTCGCAGCCAAAAGAATAAAATTGTGAGTAGTCGTTATA
TAATCATAAGGCAATGCATTTTTTTGATTATTTGAGACTAGTAGTAAGACGGAGGAGGAGGAGGAGACGAATCATACGAGACACTT
GGGATCGGTGGAAAAGACGTGTCGGAGTAGGAAGGAAGCGGTGGTGGCGACGATGTGTATGAATATTCAGGTGTTGGTTCGTAAGT
CGGAGGTGCTTGTGGTTGTGGAGGATGGCTTTCCGTACATCCCTTTGCTGGTGGTGGAGACTGGATTGGTGAGTAGTAATATTCAG
TTGGTGGTGGAGGACTTGGTGTTTCCCATGGATAGTAAACCGGTGCTGGTGGTGGAGGACTTTGTGTTTCGGATGGATAGTAAACT
GGTAATGGTGGTGGAGGACTTGGTGTTTCTGATGGATAGTAAACCGGTGATGGTGGTGGAGGACTTGGTGTTTCCGATGGATAGTA
AACCGGTGATGGTGGTGGTGGACTTTGTGTTTCAGATGGATAGTATACCGGTGACGGTGGTGGTGGACTTGGTGTTACCGGTGGAT
AGTATACTGGTGTTGGCGGTGGAGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889910 hypothetical protein ARALYDRAFT_312231 [Arabidopsis lyrata subsp. lyrata]7732e-080
NP_172668 leucine-rich repeat extensin-like protein 1 [Arabidopsis thaliana]7222e-074
ADA62506 c-myc tagged LRX1 [synthetic construct]7222e-074
CAB62280 hydroxyproline-rich glycoprotein DZ-HRGP [Volvox carteri f. nagariensis]3305e-029
ABA41399 pherophorin-C1 protein precursor [Chlamydomonas reinhardtii]3191e-027

Swiss-Prot top hits (Blast detail)Scoree value
O65375 Leucine-rich repeat extensin-like protein 17229e-076
O48809 Leucine-rich repeat extensin-like protein 24933e-049
Q9T0K5 Leucine-rich repeat extensin-like protein 33796e-036
Q9FPQ6 Vegetative cell wall protein gp12748e-024
Q9LJ64 Pollen-specific leucine-rich repeat extensin-like protein 12505e-021

TrEMBL top hits (Blast detail)Scoree value
Q3HTK5 Pherophorin-C2 protein3322e-029
Q9SBM1 Hydroxyproline-rich glycoprotein DZ-HRGP3304e-029
Q4A2S9 Putative membrane protein3304e-029
Q3HTK6 Pherophorin-C1 protein3286e-029
Q010M7 Predicted membrane protein (Patched superfamily) (ISS)3197e-028

Arabidopsis top hits (Blast detail)Scoree value
AT1G12040.1 LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1); histidine phosphotransfer kinase/ protein binding / structural constituent of cell wall7291e-077
AT1G62440.1 LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2); protein binding / structural constituent of cell wall4943e-050
AT4G13340.1 leucine-rich repeat family protein / extensin family protein3795e-037
AT3G19020.1 leucine-rich repeat family protein / extensin family protein2505e-022

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  100%

Unigene Members