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Information for unigene UN74500
| FASTA Sequence |
| Unigene ID: UN74500 | Length: 730 |
SSR | | GGGAGACTCAGTACCATTTCTTCTTCCACCAATTTCTCTGACGCGCTTTCTTCTCAGCTCTCTCATCTTCACGTCCGGCGCATTTC
GTGCGAAGAGCTAAAGGTTTTTTTTTTTTTTGGAGCTCATGGACAGCTTCTGGCAATTGGGTGATGAGCTACGAGGCCAGACACAG
TCACGAGCATCAGAGGATCACAAATGGTCCACCGTCGCAACCAAGCTCGCTGAGCAGACTAGGATGAAAAGCGAAAGGTCGAACAA
CCTCGATCTCTCCAAAGCTGGCTACTCCGAGTTCAGACCATCAGACAAGCTTAGTTTCCACGACAACAACAACAACAACCTTAGCT
TCAACATGTTTAACAACAGCAATGTTTACAACAACATGAATGCTTCTGTTTTCCAGAAGAACGACTTCTTTAAAAGCGGAGGAGGC
AATATGAAAGTTAACAAGTATAGTGGCAATGTTGTTGCTAACAAAGAGCTGAGTAATAACAGCAACAAACACAACAACAGCAATTA
TAGTGCTGTTGACAAGAGGTTTAAGACTCTGCCTGCGTCCGAGACGCTTCCGAGGAGCGAAGTTCTTGGCGGGTACATCTTTGTTT
GTAACAACGATACTATGGAGGAGGACTTGAAACGCCACCTGTTTGGGTTACCTCCAAGATACAGGGACTCTGTGAGGGCATAACAC
CTGGATTGCCTCTGTTTCTTTACAATACACCACTCACCAGCT
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_189345 DCD (Development and Cell Death) domain protein [Arabidopsis thaliana] | 419 | 4e-039 |
| AAM64572 gda-1, putative [Arabidopsis thaliana] | 418 | 5e-039 |
| XP_002875357 hypothetical protein ARALYDRAFT_484493 [Arabidopsis lyrata subsp. lyrata] | 416 | 8e-039 |
| XP_002328947 predicted protein [Populus trichocarpa] | 368 | 3e-033 |
| ACJ84912 unknown [Medicago truncatula] | 365 | 7e-033 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P37707 B2 protein | 268 | 5e-023 |
| Q54L50 Putative uncharacterized protein DDB_G0286901 | 133 | 2e-007 |
| Q54DK6 Putative uncharacterized protein DDB_G0292164 | 127 | 1e-006 |
| Q558U1 Probable serine/threonine-protein kinase ifkA | 123 | 4e-006 |
| Q869W0 Homeobox protein 2 | 121 | 6e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LSC7 AT3g27090/MOJ10_18 | 419 | 3e-039 |
| Q8LBT1 Gda-1, putative | 418 | 3e-039 |
| B9N102 Predicted protein | 368 | 2e-033 |
| B7FJI3 Putative uncharacterized protein | 365 | 5e-033 |
| O23769 Putative uncharacterized protein | 359 | 2e-032 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G27090.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42050.1); Has 642 Blast hits to 564 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink). | 694 | 2e-073 |
| AT5G42050.1 FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27090.1); Has 5084 Blast hits to 2870 proteins in 85 species: Archae - 0; Bacteria - 24; Metazoa - 270; Fungi - 58; Plants - 157; Viruses - 8; Other Eukaryotes - 4567 (source: NCBI BLink). | 266 | 9e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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