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Information for unigene UN75990

FASTA Sequence
Unigene ID: UN75990Length: 613 SSR 
GCTCTGGTCGTCGACGTGGTTCTCGTGGCGAGACAGTTTGATCATCAAGACGAGTTAGGGTGTGAGCAGGTGATAGAGAGGTGGTT
GGTTCAGTATGATAACAGACAGGTTAGGGAAGCTAGCAGCAGCAGGAGGTCAAGTAGTAGTAGTAGTAGTAGTAACAGTAAGCTGC
AAGTGATGTATAAGAAAGCTACTTTGCTGCTGAGATCGCTCTTTGTGATGGTTAGGCTTTTACCTGCTTACAAGATCTTCAGAGAG
CTCAACTCCTCTGGACAGATCTGCAAGTTTAAGCTTGTGCCTAAGGTTCCAACCATAGTCGAGCCGTTCACTCGTAGAGAAGAGGC
GGAGATGCAGAGGTTCGCTTTTACTCCGGTTGATACCATCTGCGGTAGGCTTTGTATGTCCGTGTTGTACCGGTCTCTATCTGACG
TCAGCTGCCAAAACTCGAGTCCTGTCTCTCCGACGTTTATAACGGATTACGTTGGAAGTCCATTGGCTGATCCGTTGAAGAGGTTC
CCTTCTCTTCCTCTCTCGTACGGTCGCCTCCGTTGCTGTCTTTCCAGAGGAGGCATAGCTGGAGTTTCGACCGTTGCAAGGCCTCT
CCTCCTCCGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002885279 predicted protein [Arabidopsis lyrata subsp. lyrata]7052e-072
BAB01803 unnamed protein product [Arabidopsis thaliana]7024e-072
NP_188507 Autophagy-related protein 13 [Arabidopsis thaliana]7024e-072
BAF00799 hypothetical protein [Arabidopsis thaliana]7024e-072
XP_002522187 conserved hypothetical protein [Ricinus communis]5142e-050

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q0WQ00 Putative uncharacterized protein At3g18770 (Fragment)7023e-072
Q9LSA0 Emb|CAB62463.17023e-072
B9S868 Putative uncharacterized protein5142e-050
B9GGD4 Predicted protein5105e-050
B9N9E0 Predicted protein5096e-050

Arabidopsis top hits (Blast detail)Scoree value
AT3G18770.1 LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49590.2); Has 376 Blast hits to 291 proteins in 100 species: Archae - 0; Bacteria - 15; Metazoa - 70; Fungi - 108; Plants - 62; Viruses - 7; Other Eukaryotes - 114 (source: NCBI BLink).7022e-074
AT3G49590.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18770.1); Has 1841 Blast hits to 549 proteins in 149 species: Archae - 0; Bacteria - 58; Metazoa - 305; Fungi - 125; Plants - 73; Viruses - 5; Other Eukaryotes - 1275 (source: NCBI BLink).3033e-028
AT3G49590.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18770.1); Has 1841 Blast hits to 549 proteins in 149 species: Archae - 0; Bacteria - 58; Metazoa - 305; Fungi - 125; Plants - 73; Viruses - 5; Other Eukaryotes - 1275 (source: NCBI BLink).3033e-028

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  100%

Unigene Members