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Information for unigene UN76396
| FASTA Sequence |
| Unigene ID: UN76396 | Length: 814 |
SSR | | CGTTGTAAGAGCTTGTGATACAGATTATCCATTGACTCAGACCCAACAAATGTAACATTAAACCACATTTCAGCAGCACTCAGCAG
ATATAAAGGGTCAGAAGAACTAATCTAAAAGCTACATATAGCTAAACATCATTCTAATATTTTTAAGAGTGGTGTGGAGCTCCGTA
ATACATTATTCCAGATGGCTGGTAAGTACCTTGTTGAGGTTGTTGTTGTTGTTGTTGAGCTGAGTTGGACTGAGGCTGTTGATTAC
CTATCATATGTGGTGGTGGTGGAGGCGGCGGAAGTCCAGGTGGCATTAATGGTATGTTGCCGAAGCCGTAAGGATTGTTCATTACA
GGCGGATTCAAGAACTGTGGTTGTGGTGCTGCTGCTGGATTAGGGATCACATGGTGGTACTGACCTTGTGTGGCGGGTGTCTGGTT
GTTGTAAGAAGGGACAAACGTGTTACTGTCTGAAACCGGAGCTGTGCTCTCTGGTTTGGATAGACCAGAAGACTTTGTTGCTTCGG
CTGCGAATGAAGAGAGAACAGATTGCATGATCATATGTGACGAGGTGGAAGCTGTGAGCATCGCTGCTATTGAAGCAGGCGTCATC
TTTGATGCTTGGCCAGATTTTGTATCGCTGTTGTTGTCAGTTGAGACTGATCCTGGAGCGACGGTTGTTGGTTTTGGAGCGTAATC
CTCATGCTTGAGACGTTTCTGCATGTTCTGAGCTTCTTCTGTTTGTTCTTGTGCTACCTGAATCTGAGCTTCCAGATACTCCAGTT
CTAATTCCTGTTCGCGTAGTGCGTCTTTAAGCTGGTTTAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAZ66926 117M18_7 [Brassica rapa] | 952 | 7e-101 |
| ACK44519 AT5G10060-like protein [Arabidopsis arenosa] | 859 | 4e-090 |
| CAB92047 putative protein [Arabidopsis thaliana] | 854 | 2e-089 |
| NP_196568 ENTH/VHS family protein [Arabidopsis thaliana] | 854 | 2e-089 |
| XP_002873435 hypothetical protein ARALYDRAFT_487831 [Arabidopsis lyrata subsp. lyrata] | 849 | 6e-089 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q4AC18 117M18_7 | 952 | 5e-101 |
| B7U9T6 AT5G10060-like protein | 859 | 3e-090 |
| Q8GUK8 At5g10060 | 854 | 1e-089 |
| Q9LX22 Putative uncharacterized protein T31P16_50 | 854 | 1e-089 |
| Q0WV48 Putative uncharacterized protein At5g10060 | 707 | 1e-072 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G10060.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65180.1); Has 4531 Blast hits to 4161 proteins in 412 species: Archae - 14; Bacteria - 404; Metazoa - 1999; Fungi - 666; Plants - 262; Viruses - 36; Other Eukaryotes - 1150 (source: NCBI BLink). | 855 | 5e-092 |
| AT5G65180.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 3523 Blast hits to 3241 proteins in 333 species: Archae - 25; Bacteria - 251; Metazoa - 1575; Fungi - 421; Plants - 142; Viruses - 17; Other Eukaryotes - 1092 (source: NCBI BLink). | 525 | 1e-053 |
| AT5G65180.2 unknown protein | 525 | 1e-053 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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