 |
Information for unigene UN76805
| FASTA Sequence |
| Unigene ID: UN76805 | Length: 814 |
SSR | | GAGAGAAGAGGAAGATAGAGAGATAGAGAGAGAGAGAGATGACGCTTAACGATGAGCAAGAGCACGAGGTGTACGGTGGAGAGATC
CCTGAGGAGGAAGGAGAGATGGAGACGGACGAGTACGAGGAACACGTCGGCGAAGAAGAAGGCGCCGCCGCCGCCGGAGGAGACGA
GGAGCTTGAGCCAGGCTCTAGCTCTAAGGATCTGGAGGATATGAAGAAGCGAATCAAGGAGATCGAGGAAGAAGCTGGAGCTTTGC
GTGAAATGCAAGCCAAAGCTGAGAAAGAGATGGGCGCTGATCAAGACCCATCAAGTGCTATTAGTTCGGCTGAGAAGGAGGAAGTT
GATTCCCGTTCAATCTATTTTGGCAATGTGGACTATGCATGTACCCCAGAGGAAGTCCAGCAACATTTCCAGTCCTGCGGAACAGT
CAATAGGGTTACGATTCTGACAGACAAGTTTGGCCAACCCAAAGGTTTTGCCTACGTCGAATTCGTGGAAGAAGATGCCGTTCAGA
ATTCTCTTATCTTGAACGAGTCAGAGCTGCATGGTCGTCAGATAAAGGTTTCAGCAAAGAGAACTAACGTCCCTGGAATGAGACAG
TTCCGAGGAAAGCGTCCCTTTAGACCCATGAGAGGATTCATGCCTGGAATTCCATTTTATGCTCCTTATGGTTATGGGAGAGTTCC
CAGGTTCAGACGCCAATGCGCTACAGACCGTACTGATTAAAAGCAAATTGGGTGGTAAAGTAGCAGCTGCTTTTACTTCAGTAGGT
ATATCATCATCGTGTTCATAGCGCACACGTGCTCGATTAA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002864097 hypothetical protein ARALYDRAFT_918145 [Arabidopsis lyrata subsp. lyrata] | 1006 | 4e-107 |
| NP_568751 polyadenylate-binding protein 1 [Arabidopsis thaliana] | 1002 | 1e-106 |
| AAM61036 contains similarity to poly(A)-binding protein II [Arabidopsis thaliana] | 999 | 2e-106 |
| BAA97374 unnamed protein product [Arabidopsis thaliana] | 965 | 2e-102 |
| AEN74948 poly(A)-binding protein 1 [Citrus sinensis] | 837 | 2e-087 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9DDY9 Polyadenylate-binding protein 2-A | 386 | 1e-036 |
| Q7ZXB8 Polyadenylate-binding protein 2-B | 386 | 1e-036 |
| Q6NVP7 Polyadenylate-binding protein 2 | 382 | 4e-036 |
| Q86U42 Polyadenylate-binding protein 2 | 378 | 1e-035 |
| Q28165 Polyadenylate-binding protein 2 | 377 | 2e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q93VI4 AT5g51120/MWD22_6 | 1002 | 8e-107 |
| Q8LG48 Contains similarity to poly(A)-binding protein II | 999 | 2e-106 |
| Q9LU62 Similarity to poly(A)-binding protein II | 965 | 1e-102 |
| B9RA16 Polyadenylate-binding protein, putative | 758 | 1e-078 |
| B9RA13 Polyadenylate-binding protein, putative | 738 | 3e-076 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G51120.1 PABN1 (POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding / protein binding | 1006 | 2e-109 |
| AT5G65260.1 polyadenylate-binding protein family protein / PABP family protein | 662 | 1e-069 |
| AT5G10350.1 polyadenylate-binding protein family protein / PABP family protein | 628 | 1e-065 |
| AT5G10350.2 polyadenylate-binding protein family protein / PABP family protein | 598 | 3e-062 |
| AT2G35410.1 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | 126 | 2e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
| Unigene Members | |
 |
|
|
