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Information for unigene UN77009
| FASTA Sequence |
| Unigene ID: UN77009 | Length: 748 |
SSR | | GACCGATCGGTTTATCTGCTCGCGATAAAAACCGACGTGGAAACGCAAGGAGACTTCATAAGGTTCTTGATCAAGGAAGTCGAAAA
CGCAGCGTTTTCGGACATAGAAGACGTGGTGCCTTTCGTGAAATGGCTCGACGACGAACTCTCTTACCTGGTCGACGAGAGAGAGT
GTTGAAACACTTCGAGTGGCCGGAGCAAAAGGCAGACACTTTGCGTGAAGCAGCGTTTTGTTACTTCGATCTGAAGAAACTCGTAT
CGGAAGCTTCTCGTTTCCGGGAAGACCCTCGCCAGCCTTCTTGCTCTGCTCTCAAGAAAATGCAAGCTCTGTTCGAAAAGTTAGAG
CATGGTGTTTATAGTCTGTCGAGGATGAAGGAATCATCGGCGACAAAGTTCAAGACTTTCCAGATTCCGGTTGATTGGATGCTCGA
AACCGGCGTTACTAGTCAGATTAAATTGGCGTCAGTGAAACTAGCAATGAAGTATATGAAGAGGGTATCTGCAGAGCTGGAAGCCA
TTGGAGGCGGTGGCCCTGAAGAGGAAGAGCTTATTGTTCAAGGTGTCAAATTTGCATTCCGTGTTCACCAGTTCGCAGGAGGATTT
GATGCAGAAACAATGAGGGCATTTCAAGAGCTAAGAGATAAAGCGAGATCATGTCATATTCAATGTCAAAGCCCATTAACATAAGC
TCATGTTGAAGCAATCTTAGCTTCATATATATATATATTCACATCATTTGTATTTTCGTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002870037 hypothetical protein ARALYDRAFT_493003 [Arabidopsis lyrata subsp. lyrata] | 818 | 2e-085 |
| NP_193591 uncharacterized protein [Arabidopsis thaliana] | 812 | 1e-084 |
| CAA16736 pherophorin - like protein [Arabidopsis thaliana] | 812 | 1e-084 |
| XP_002266934 PREDICTED: hypothetical protein [Vitis vinifera] | 699 | 1e-071 |
| CBI30666 unnamed protein product [Vitis vinifera] | 699 | 1e-071 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LI74 Protein CHUP1, chloroplastic | 470 | 2e-046 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O49524 Pherophorin - like protein | 812 | 7e-085 |
| Q8L7S5 AT4g18560/F28J12_220 | 812 | 7e-085 |
| B9I1N4 Predicted protein | 691 | 8e-071 |
| B9S986 Putative uncharacterized protein | 691 | 8e-071 |
| B9H2J9 Predicted protein (Fragment) | 628 | 2e-063 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G18570.1 proline-rich family protein | 812 | 4e-087 |
| AT3G25690.1 CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) | 470 | 2e-047 |
| AT1G07120.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: leaf whorl, petal, inflorescence meristem, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT4G18570.1); Has 197 Blast hits to 171 proteins in 40 species: Archae - 0; Bacteria - 8; Metazoa - 25; Fungi - 11; Plants - 78; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | 384 | 2e-037 |
| AT1G48280.1 hydroxyproline-rich glycoprotein family protein | 380 | 5e-037 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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