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Information for unigene UN77320
| FASTA Sequence |
| Unigene ID: UN77320 | Length: 701 |
SSR | | AGCCTTTTCACCAGTCGCAAAGTTGTAATTGCAATAGCAAAAAAAAAAAGATTATCCAACCAAAAAAGCATCATTTCAAGTCAAAA
CAGAAAACAACCATTCCGCAAAAATTTTGTCAATCAGAGAGAGAGAGAGAAAGAGAGTTCAAAGCAGTACTCAAAGACAAAAGCTT
CTCACAAGTGATCATTAATGGAAAGTGAAGCCATCATATCGCTTGGGCTACCACTCTTGCCTTCACTAGGCTGATTCACGTTTCTC
AACACATCCAACGCCTCTGAAACTTTAGCATTTAGAGCCTCTGGTGACTCTATCAGATGCAACACTTCTGTCTGATCCATCTCCAA
AAGCATACCCGTCACTTTGGCAGCATTCTCGAAGTTGGCAAACCCGAAACACCTCGACCTCCCATCTCCGTCCCTCATCACCACAG
CGCTCGAGATACCACCGTACTGACCAAAAGTAGTCTTCAGCTCATCATCAGTCGTCGTCTCCGAGAGATTCTTCACGTAGACGTTG
GTGAACTTCATCTTATCAGCAGCGGACTCTCTCTCCTCCTTCTTGAGAAACGGTCCAACGAAGATCTGCTTGTCGTTCAGTATCTT
CCCGTTGAGCTTCTCTATAGCGCTCTTAGCCGAGTCCTCGCTCTCGAACTGCACAAAGCCGTATCCTTTGGACTGACCCATGTGAT
CAGTAGCGACCTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAK25927 putative poly(A) binding protein [Arabidopsis thaliana] | 538 | 5e-053 |
| NP_179916 poly(A) binding protein 4 [Arabidopsis thaliana] | 538 | 5e-053 |
| XP_002878680 PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata] | 533 | 2e-052 |
| XP_002518733 polyadenylate-binding protein, putative [Ricinus communis] | 457 | 1e-043 |
| BAJ53194 JHL03K20.3 [Jatropha curcas] | 452 | 5e-043 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P42731 Polyadenylate-binding protein 2 | 430 | 8e-042 |
| O64380 Polyadenylate-binding protein 3 | 356 | 3e-033 |
| Q05196 Polyadenylate-binding protein 5 | 353 | 7e-033 |
| Q4WK03 Polyadenylate-binding protein, cytoplasmic and nuclear | 308 | 1e-027 |
| A1D4K4 Polyadenylate-binding protein, cytoplasmic and nuclear | 308 | 1e-027 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O22173 Putative poly(A) binding protein | 538 | 4e-053 |
| Q9C5J0 Putative poly(A) binding protein | 538 | 4e-053 |
| B9RYE9 Polyadenylate-binding protein, putative | 457 | 9e-044 |
| B9GHB4 Predicted protein | 447 | 1e-042 |
| B9HS30 Predicted protein | 435 | 3e-041 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G23350.1 PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor | 538 | 2e-055 |
| AT4G34110.1 PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor | 430 | 8e-043 |
| AT1G49760.1 PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor | 378 | 8e-037 |
| AT1G22760.1 PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding / translation initiation factor | 356 | 3e-034 |
| AT1G71770.1 PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor | 353 | 7e-034 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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