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Information for unigene UN78956

FASTA Sequence
Unigene ID: UN78956Length: 550 SSR 
GGTTTATAAAGGGTCTGCAATAGATTATCAAACCCAAATGTTACGTACAATGACACTAGTGTACATAATTGGCATTCTGAATCACA
AACACATGCCCAAACGTAGTTCACAACAAACACAAATGGCTGCTCGAAAGACACTAGGTTAATAGAGATTGATCGCTACACACACA
ATTGAAGTAAACCAAATAACACAGTAGAAGTAGTTGAAGTAGCTAACATGATGATGATGATGATGATGATGATGTGAAATCAATTG
GACCACACATGAACATAGCCGTGTCTGTTTCCTGTGTATATCTCATTGCGCTCTTCATCATAGAAGAAAGCCGTTATGTCTTCCAG
AACTTCAGCCACAGCGTTTCTTCTTTGCTTCGAGTTGTTCCCCAAGGAACTACTGCTACTGCTACTGCTCTCATCTTCTTTTGGAG
GTCCACTGCTTGATGTTATCTTAGCTAAGCATTTCCCAGTCAATATGTTGCTGATGTTGATAGATCCCGCATTTCCTTCTATCCAC
TGGTCTTCAGTATCTGCTTTGCAATAAGAGATGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002877961 hypothetical protein ARALYDRAFT_906825 [Arabidopsis lyrata subsp. lyrata]4585e-044
NP_566994 transducin/WD40 domain-containing protein-like protein [Arabidopsis thaliana]4504e-043
CAB70993 putative protein [Arabidopsis thaliana]4504e-043
NP_181397 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]4057e-038
AAC67355 unknown protein [Arabidopsis thaliana]4057e-038

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9C5G8 AT3g54190/F24B22_1504503e-043
Q9M387 Putative uncharacterized protein F24B22.1504503e-043
Q6RF50 Putative uncharacterized protein4055e-038
Q84J57 Putative uncharacterized protein At2g386304055e-038
Q9ZVI5 Putative uncharacterized protein At2g386304055e-038

Arabidopsis top hits (Blast detail)Scoree value
AT3G54190.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38630.1); Has 77 Blast hits to 77 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).4512e-045
AT2G38630.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54190.1); Has 79 Blast hits to 77 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).4063e-040

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  100%

Unigene Members