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Information for unigene UN78972
| FASTA Sequence |
| Unigene ID: UN78972 | Length: 647 |
SSR | | GCAAAGTCAACAGATTTTTAACTTATTTCACAAACATTCATCATCTTCACAAATGTGGATCATATTCTTTTCACTGTATAAATAAT
TAAGTATTTTAAAAATAGTAAAACCTCAAAAGTAAAAAATAAATCTAGATTCTGTAAAATGGGAACTCATGAAACCAGATAAAGAA
ACTTCACCGGCAGTCTTACGTCCCCGCGGCGAGATATATATAATCATCTTCTTACTCCCTTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCCCCGTATAGCCACCACAGTTCAATGATTGGTTCCAAAACTGTGACACTTTGGAACAAAAATAAATTTAAAAAAAGTGGAGAA
AACCTGTATCTATGTCCTTGTTCATTCAGACTGATTGTCTCTTGGCGAATGGTTTTTGGCAGATGAGAAGTCTCTGTTCACTGCTG
CTTTCAACCTCTATGACTCTAGCTTCCCATTTCAACTGCGTTGTCAAAGCTCTAGCTGTTTCCACCAGCTGTGCAGTGTCACGGAT
TATCACCCATCCCTCTGGACGAAGTAATCTATCAATCTCTGTGAATATTTGCATAAACGAGCATGAGCTCCGGAGCTTACTTGTCT
GAAGAGTCAAAAGATTGTCTGCGTGGACAAGATCATATGTTCTGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABV89659 dehydration-responsive protein-related [Brassica rapa] | 400 | 4e-037 |
| XP_002889181 hypothetical protein ARALYDRAFT_895718 [Arabidopsis lyrata subsp. lyrata] | 399 | 6e-037 |
| NP_177948 putative pectin methyltransferase QUA2 [Arabidopsis thaliana] | 385 | 2e-035 |
| AAG52090 unknown protein, 5' partial; 69506-67937 [Arabidopsis thaliana] | 385 | 2e-035 |
| XP_002306570 predicted protein [Populus trichocarpa] | 333 | 3e-029 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C9Q8 Probable pectin methyltransferase QUA2 | 385 | 1e-036 |
| Q3EC77 Probable methyltransferase PMT5 | 263 | 2e-022 |
| Q8GYW9 Probable methyltransferase PMT4 | 254 | 2e-021 |
| Q9C6S7 Probable methyltransferase PMT20 | 162 | 9e-011 |
| Q8L7V3 Probable methyltransferase PMT26 | 162 | 9e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8IXV9 Dehydration-responsive protein-related | 400 | 3e-037 |
| B9H723 Predicted protein | 333 | 2e-029 |
| B9RJL5 S-adenosylmethionine-dependent methyltransferase, putative | 321 | 4e-028 |
| B7FM25 Putative uncharacterized protein | 304 | 4e-026 |
| A2X9R4 Putative uncharacterized protein | 288 | 3e-024 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G78240.1 TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase | 386 | 9e-038 |
| AT1G78240.2 TSD2 (TUMOROUS SHOOT DEVELOPMENT 2); methyltransferase | 386 | 9e-038 |
| AT2G03480.1 dehydration-responsive protein-related | 263 | 2e-023 |
| AT2G03480.2 dehydration-responsive protein-related | 263 | 2e-023 |
| AT1G13860.2 dehydration-responsive protein-related | 254 | 2e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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