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Information for unigene UN80342
| FASTA Sequence |
| Unigene ID: UN80342 | Length: 764 |
SSR | | AGGGCCTTACTCTCTTCTCTTTCTATTAACCTCTCATTTTAATAACAGAGAGAGAAATAAAAAGAGAGTCTTTTCTCTTTCTTCTT
CTGAGAGAGAGAGAGAAACAGAGCTCTGGTAATGGCGAGCTTGGTCTTATCAGAATGCGGAATAAGACCACTCCCCAGAATCTACA
CCACACCCAGATCCACTCCCCTCTCTTACACCAACAAACCCACCTCCTTCAAATTCAGACAACCCCCTTCTACTCTCAGGTTCGGT
CTAAATTCTCGAAACTGGGCGTTGAATGTGAGCACGCCTCTAACAGTCGACTCCTCTCCACCAATCGAGGAAGAACCACCCAAAAC
GCAGAGATTCGACCCAGGCGCTCCTCCTCCGTTCAGCTTAGCTGACATCAGAGCAGCTATACCCAAGCATTGCTGGGTTAAGAACC
CATGGATATCGATGAGTTACGTCGTCAGAGACGTAGCGATCGTGTTCGCGTTGGCTGCTGGTGCTGCTTACCTCAACAGTTGGCTC
GTTTGGCCTCTCTATTGGTTTGCTCAAGGAACCATGTTCTGGGCTCTCTTTGTTCTTGGCCGTGACTGTGGACATGGAAGCTTCTC
AAATGATCCGAGGTTGAACAGTGTGGTGGGTCACCTTCTTCATTCCTCTATTCTGGTCCCTTACCATGGCTGGAGAATTAGCCACA
GAACTCACCACCAGAACCATGGACATGTTGAGAACGACGAATCATGGCATCCTGTAAGTTCTTGTTTCAGTCGTGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAT02410 chloroplast omega-3 fatty acid desaturase [Brassica napus] | 1012 | 7e-108 |
| CAB85467 chloroplast omega-3 fatty acid desaturase [Brassica juncea] | 943 | 7e-100 |
| ACS26170 chloroplast fatty acid desaturase 7 [Brassica napus] | 933 | 1e-098 |
| P48618 RecName: Full=Omega-3 fatty acid desaturase, chloroplastic; Flags: Precursor | 891 | 7e-094 |
| NP_196177 omega-3 fatty acid desaturase (delta-15 desaturase) [Arabidopsis thaliana] | 868 | 3e-091 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P46310 Omega-3 fatty acid desaturase, chloroplastic | 916 | 4e-098 |
| P48618 Omega-3 fatty acid desaturase, chloroplastic (Fragment) | 891 | 3e-095 |
| P48622 Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic | 868 | 2e-092 |
| P48620 Omega-3 fatty acid desaturase, chloroplastic | 792 | 1e-083 |
| P48619 Omega-3 fatty acid desaturase, chloroplastic | 681 | 8e-071 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q6PN70 Chloroplast omega-3 fatty acid desaturase | 1012 | 5e-108 |
| Q9M4D4 Chloroplast omega-3 fatty acid desaturase | 943 | 5e-100 |
| C5J3R0 Chloroplast fatty acid desaturase 7 | 933 | 7e-099 |
| Q5EFF3 Fatty acid desaturase | 859 | 3e-090 |
| Q8W4M9 Temperature-sensitive omega-3 fatty acid desaturase, chloroplast | 859 | 3e-090 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G11170.1 FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase | 916 | 4e-099 |
| AT5G05580.1 FAD8 (FATTY ACID DESATURASE 8); omega-3 fatty acid desaturase | 868 | 1e-093 |
| AT2G29980.1 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase | 600 | 2e-062 |
| AT2G29980.2 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase | 600 | 2e-062 |
| AT3G12120.1 FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase | 278 | 4e-025 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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