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Information for unigene UN80467
| FASTA Sequence |
| Unigene ID: UN80467 | Length: 732 |
SSR | | GGATGCCTCAGTATGGTCATCAACATCCTCATTGCCCGCCTAATCATCTGAATGGAATGACAGGGTTTCCTTATTACCACCACCAC
CCCATGAACACATCGTTACAGCACAGTCAGATGTCACAGAATGGTCAGGTGCCTTTACAGAATGGTCAGATGCCTATGGTCCATCA
TCATCATCATTCTTGGCCACAGACACAGATAGGAAACCACCCGTCTCCTAACGAGGTGAGAGTGACTAAGCTTGACAGAAGAGAGG
AAGCGTTGCTTAAATTTAGACGTAAAAGGAACCAAAGGTGTTTTGACAAGAAGATTAGGTATGTGAATAGGAAGCGGCTTGCTGAG
AGGAGACCACGTGTTAAGGGTCAGTTTGTTAGGAAAATGTACGGCGTGAATGTTGACTTAAACGGTCAGCCTGAGCCTGACTCAGC
TGATTATGATGACGAGGAAGAGGAGGATGAAGAAGAAGAGGAGAATCGAGACTCATCTCCTCAGGATGATGCTCTTGGAACTTGAG
AAACATGGGAGAGAACTGAAAACCGTGTTTGGTTTTATATCAAGAATGACGGTGGTAGAGCCAAAAAAACATTGGATATGTAACTC
ACTTGCAAAAGGAAATAATGGCTCAGCTTTGAGCATTGAAAATCACTATGTAGGTGTGTGGCTTAGTTCGTTGATAGACATACGAT
GTGTTTGATCATGTTCTATTCACGTTCAGTGAGTTATGTAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ADA58339 pseudo-response regulator 1a [Brassica rapa] | 811 | 1e-084 |
| CAB75508 ABI3-interacting protein, AIP1 [Arabidopsis thaliana] | 679 | 3e-069 |
| NP_200946 two-component response regulator-like APRR1 [Arabidopsis thaliana] | 679 | 3e-069 |
| XP_002864730 hypothetical protein ARALYDRAFT_496297 [Arabidopsis lyrata subsp. lyrata] | 651 | 4e-066 |
| ADA58344 pseudo-response regulator 1b [Brassica rapa] | 641 | 6e-065 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LKL2 Two-component response regulator-like APRR1 | 684 | 3e-071 |
| Q689G9 Two-component response regulator-like PRR1 | 219 | 3e-017 |
| Q689G6 Two-component response regulator-like PRR95 | 179 | 1e-012 |
| Q93WK5 Two-component response regulator-like APRR7 | 176 | 3e-012 |
| Q8L500 Two-component response regulator-like APRR9 | 172 | 7e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| D2KK85 Pseudo-response regulator 1a | 811 | 9e-085 |
| D2KK90 Pseudo-response regulator 1b | 641 | 5e-065 |
| B9N4C8 Pseudo response regulator | 370 | 1e-033 |
| C0SNP3 Timing of CAB expression 1 | 370 | 1e-033 |
| B9RLV6 Sensory transduction histidine kinase, putative | 369 | 2e-033 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G61380.1 TOC1 (TIMING OF CAB EXPRESSION 1); transcription regulator/ two-component response regulator | 685 | 2e-072 |
| AT5G02810.1 PRR7 (PSEUDO-RESPONSE REGULATOR 7); transcription regulator/ two-component response regulator | 176 | 2e-013 |
| AT2G46790.2 APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator | 172 | 7e-013 |
| AT2G46670.1 pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative | 172 | 7e-013 |
| AT2G46790.1 APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator | 172 | 7e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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