 |
Information for unigene UN80647
| FASTA Sequence |
| Unigene ID: UN80647 | Length: 432 |
SSR | | GGAAAGGCAAAAAAAGAGTAAGAGAAGATGGAGAAGCAGTTGGATGAAACCGTGGAGACTGCTCATGTGGAACGAGGCATCCGAGA
GTCATCACCCGAGAAAAAGAAAGAAAAATCCCATAAACATAGAGGAATATTCCACCTCCACCATCACTCAAAAGATGAGAAAGAGG
AAGACAAGAAGAAAGAGGGATCAAAGAGAGAGAAGATAGCTGCAGCGATGGTTGGTCTCGGAGCCACCCTCAAGAAGATTAAGCCT
AAGGGCCGCCATGGAGGCGGTGGGAACCACGAAGGAGGAGGAGAAGAGGAGGAGGAAGAAGAAGAAGAACAAGAAGAACAAGAGGA
GGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGATGATGGTGGGGATGAAGAAGGGGGAGGCAAGTTTAGTGCTTTCATTTCCA
TG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002872317 hypothetical protein ARALYDRAFT_489655 [Arabidopsis lyrata subsp. lyrata] | 507 | 5e-050 |
| AAF88010 Hypothetical protein T10I18.2 [Arabidopsis thaliana] | 476 | 2e-046 |
| NP_198215 glycine-rich protein [Arabidopsis thaliana] | 439 | 4e-042 |
| XP_002872316 hypothetical protein ARALYDRAFT_489654 [Arabidopsis lyrata subsp. lyrata] | 414 | 3e-039 |
| NP_198213 uncharacterized protein [Arabidopsis thaliana] | 400 | 1e-037 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O60721 Sodium/potassium/calcium exchanger 1 | 166 | 1e-011 |
| Q7M732 Retrotransposon-like protein 1 | 153 | 4e-010 |
| Q9QZM6 Sodium/potassium/calcium exchanger 1 | 144 | 4e-009 |
| P48988 Major centromere autoantigen B | 142 | 7e-009 |
| P27790 Major centromere autoantigen B | 142 | 7e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LKU5 Putative uncharacterized protein T10I18.2 | 476 | 1e-046 |
| Q6IDP7 At5g28610 | 452 | 9e-044 |
| Q8VXY1 Putative uncharacterized protein | 439 | 3e-042 |
| Q6TXJ2 LRRGT00007 | 183 | 1e-012 |
| Q6TUD2 LRRGT00112 | 165 | 2e-010 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G28610.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root, seed, leaf; EXPRESSED DURING: E expanded cotyledon stage, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT5G28630.1); Has 1909 Blast hits to 1356 proteins in 121 species: Archae - 0; Bacteria - 8; Metazoa - 1295; Fungi - 112; Plants - 60; Viruses - 39; Other Eukaryotes - 395 (source: NCBI BLink). | 452 | 9e-046 |
| AT5G28630.1 glycine-rich protein | 439 | 3e-044 |
| AT5G66540.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 76240 Blast hits to 38667 proteins in 1479 species: Archae - 252; Bacteria - 6537; Metazoa - 31185; Fungi - 9935; Plants - 3937; Viruses - 750; Other Eukaryotes - 23644 (source: NCBI BLink). | 135 | 5e-009 |
| AT4G02810.1 unknown protein | 134 | 7e-009 |
| AT5G03710.1 unknown protein | 134 | 7e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
| Unigene Members | |
 |
|
|
