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Information for unigene UN82554

FASTA Sequence
Unigene ID: UN82554Length: 832 SSR 
ACTCTCTGGATAATCTCTGCCTTTTTTCAGACCCGTGAGCATGGTGTTCCACGACACCACGTCTCTCACAGGCATTTGATCGAACA
CCTTGCGAGCTTCCGAGATCAGACCGCGCTGAACGTAGGCCGAGATCATCGCGTTCCATGTCGAAATGTCTAGCGATGTCGTCGAT
GTCCGGTTCTGATTAAATAGCCTGCGTGCTTCCACCAAACCGTCGTCGTCTTCCCGCCGCAAGTGAAGGTTGATCAAATGGTTGAG
AGTAGCCGTTGGTGTAGTGATATTGTTGTTGTTGTTGTTGTCAACATTTGGAGAGATTAAAGAGGAGCAGCGTTGAAGCGACCTTG
GAAGATTTACGGTTAGTCGGTTGTAGCCAACGTCAAGCGTCCGAAGAAGCGAGGCACTAACACAGAACATGTCTGGAAGTTAAGAA
CACATTGAGGAATTGGACCGTTGAAAAGTTGTTGTAGTTCTTGTTACAGACCTCGGTTCCATAAAATTTTAATAAACTGATAAGCT
TGGGTTTGGTAAATTCATATTGGGCCTATCCTTTTCTCATTGAGCCAATTAGTAGTAGAGAGTAGTACTCTATATTAATCGTTCTC
TGTATTCTGTAAGCCTTATTGAATACGATCATCAACAAACATTTGGGTAAATTCCTAATTCACAGAAAAATACTCGGTTGTTTTAT
TTTACTAGATTTAGAAGCAATCAAAATTATCAATTCATTTTGAACATTATGACCAAGATAAATAGATATCCTCTTTAGTAATTCTT
TCCACATGTTCTTGGATAACTCAATCAAATTCAACAAAATGCAAGATTATGCTTTGCA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAD23598 putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group]1722e-010
EAZ44271 hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]1722e-010
NP_001062888 Os09g0327200 [Oryza sativa Japonica Group]1722e-010
BAD37262 pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Japonica Group]1686e-010
EAZ08632 hypothetical protein OsI_30906 [Oryza sativa Indica Group]1686e-010

Swiss-Prot top hits (Blast detail)Scoree value
O49399 Pentatricopeptide repeat-containing protein At4g188401593e-010
Q9SY02 Pentatricopeptide repeat-containing protein At4g027501567e-010
Q9LRV2 Pentatricopeptide repeat-containing protein At3g265401522e-009
Q9M9R6 Pentatricopeptide repeat-containing protein At1g144701522e-009
Q9SKQ4 Pentatricopeptide repeat-containing protein At2g210901494e-009

TrEMBL top hits (Blast detail)Scoree value
A3BXI2 Putative uncharacterized protein1721e-010
Q0J2K9 Os09g0327200 protein1721e-010
Q6K2P5 Putative pentatricopeptide (PPR) repeat-containing protein1721e-010
A2YZX1 Putative uncharacterized protein1684e-010
Q0DDE8 Os06g0228900 protein1684e-010

Arabidopsis top hits (Blast detail)Scoree value
AT1G13410.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G02750.1); Has 13539 Blast hits to 4793 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 35; Plants - 13298; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).1593e-011
AT4G18840.1 pentatricopeptide (PPR) repeat-containing protein1593e-011
AT4G02750.1 pentatricopeptide (PPR) repeat-containing protein1566e-011
AT1G14470.1 pentatricopeptide (PPR) repeat-containing protein1522e-010
AT3G26540.1 pentatricopeptide (PPR) repeat-containing protein1522e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
181  100%

Unigene Members