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Information for unigene UN82588
| FASTA Sequence |
| Unigene ID: UN82588 | Length: 809 |
SSR | | ACAGAAACTAGAATCTGGAAATACAATCATCTCAATGTCATGGTTTCTTCTTAAAAAGCATTCTTCATTATCCAAAAGATTTAAAA
GCAAAATTACAAACAAAGGATAGAAATAAGATTTATTAGTATCCTCCTCTCCCTCGGCCTCCTCTGGAGGAGAATCCACCACGGCC
CCTGGGAGCACCTCTTGAGGAGAATCCTCCACGTCCCCTTGGAGCACCTCTGGAGGAGAACCCTCCACGGCCTCTAGGAGCACCTC
TGCCTCTCCCACGACCACCCCCAGATTGTCCCTTTGGTTGTGGAAGGAACCTTGCTAGAGGCAAAAGCTTAGCAGGGTCGATGTAG
AACTTATCCCCTTGAGCATACGAGGTAGCTACGATACCTTCCATCATCTTGATAGAAAACAGAGATTCGTTAATGGGACCAAAGAT
CTCATCAACTTTCCCAATCTGAGTCTTGTTTTCAAGGTAGATCGGGGCATTGAAGTAAGGGATCTTCTCTTGTGAGAGCTTGGTCA
CAGCATCACCCTCACAAGCATGCACAAAGGTCGCAACTTCAATGACTTCGCTGGGAGGTCCTTCGTCACGATATCCACCACCACCA
CCAAAACGTCCACCTCCTCCGCGTCCGCCGCCACCACCAAAACGTCCTCCTCCTCCGCGTCCGCCGCCGCCACCGAAACGTCCTCC
ACCGCCATCTCTTCCTCCCCTTCCTCTGAAGCTACCGCCGCCACGTGGTGGTCTCATCTCTTTGGTTTTTATTTGTTGTTGAGCTG
CGCTCTCTCTACTAACTCCTCTCTCGATAGGGTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_566217 H/ACA ribonucleoprotein complex subunit 1 [Arabidopsis thaliana] | 772 | 5e-080 |
| AAM61071 putative GAR1 protein [Arabidopsis thaliana] | 769 | 1e-079 |
| XP_002884418 hypothetical protein ARALYDRAFT_477645 [Arabidopsis lyrata subsp. lyrata] | 759 | 2e-078 |
| NP_001068150 Os11g0579800 [Oryza sativa Japonica Group] | 752 | 1e-077 |
| EAY81419 hypothetical protein OsI_36586 [Oryza sativa Indica Group] | 746 | 5e-077 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8VZT0 Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 | 772 | 2e-081 |
| Q9FK53 H/ACA ribonucleoprotein complex subunit 1-like protein 2 | 660 | 2e-068 |
| Q5RJV1 H/ACA ribonucleoprotein complex subunit 1 | 569 | 8e-058 |
| Q61B10 Probable H/ACA ribonucleoprotein complex subunit 1-like protein | 547 | 3e-055 |
| Q9CY66 H/ACA ribonucleoprotein complex subunit 1 | 540 | 2e-054 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2R242 H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed | 752 | 7e-078 |
| A2ZFN5 Putative uncharacterized protein | 746 | 4e-077 |
| B6TFJ5 H/ACA ribonucleoprotein complex subunit 1-like protein 1 | 727 | 6e-075 |
| C5Y4Z6 Putative uncharacterized protein Sb05g022540 | 721 | 3e-074 |
| B9I5Y3 Predicted protein | 716 | 1e-073 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G03920.1 Gar1 RNA-binding region family protein | 773 | 2e-082 |
| AT5G18180.1 Gar1 RNA-binding region family protein | 660 | 2e-069 |
| AT3G22800.1 leucine-rich repeat family protein / extensin family protein | 190 | 7e-015 |
| AT1G49750.1 leucine-rich repeat family protein | 173 | 6e-013 |
| AT3G20470.1 GRP5 (GLYCINE-RICH PROTEIN 5); structural constituent of cell wall | 172 | 8e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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