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Information for unigene UN83291
| FASTA Sequence |
| Unigene ID: UN83291 | Length: 832 |
SSR | | CCTCTCCACCTCCTCAAATTATCCTCCTCCCGCTCCTCCGCACGTTTCCTCCCTCTACTTCTGGAAGCTACTACCTCCTCTCCCTC
TACGTCCCCCTTGCCGTCCTTTCACCTGCATCCTCTGCGAATCCAAACCCCCACCTTCACCCACCTCCCTCTCCTCCTCTGCCGCC
ACCGTCCCCTGCTCCTCCGCTTCCTGCTCCGCCGCACACTCCTCCCTTCAATCCACTTGACTTCCTCAAATTCTCAGATTCATCTC
TAGTCACCATCGATTGAAGCTTCATCACCACACTCCTTTTGACCCCATCGCTCATTATCCCACCACCACCAGCTCGTCACCGCCAT
CACCATCATCGCCATATCCCTCATCCGCCATCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCATTTTGTTTTGATTTTAC
AAGAAAAAGATGAATTAGTGTTACCACCATACTCACACCTACTTCCTCAAGCTTCCCAATTTCTTCACGCCAAAGGGAGCTGGGTG
AAGTTGAGTACTTGGTGCTTGACGAAGCTGACCAGATGCTTGCTGTTGGGTTTGAGGAGGCTGTGGAGTCGATTCTCGAGCAGGTA
TAGAGATTCTTCCTTTTAAGATTGACCTTCCTTTTTTTTTTACTTGGAAGAGAAAGATGTCAAAGAGTATGAGGCTTTACAGCCAG
ATAAGATTGCTGTTGATTGTGGTGAGCATAACCTCAAGGAACTAAATGCCATACAAAGGCTAGCATGAAGTGTTGTCGTGAGAAGA
GTTGGTGGTCGTGAGCTTGAACACAGAGGAGGCACGGCATTGTGGTAGTGGTGCTAGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_680225 DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] | 147 | 2e-007 |
| NP_001031943 DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] | 147 | 2e-007 |
| AAC13590 contains similarity to the conserved C-terminal domain of helicases (Pfam: helicase_C.hmm, score: 90.11), similar to DEAD-box h [Arabidopsis thaliana] | 147 | 2e-007 |
| CAA09196 RNA helicase [Arabidopsis thaliana] | 147 | 2e-007 |
| AAM91087 At5g26740 [Arabidopsis thaliana] | 147 | 2e-007 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8L7S8 DEAD-box ATP-dependent RNA helicase 3 | 147 | 7e-009 |
| Q0DM51 DEAD-box ATP-dependent RNA helicase 3 | 131 | 5e-007 |
| P10323 Acrosin | 125 | 3e-006 |
| Q8BHE0 Proline-rich protein 11 | 124 | 3e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2PEW4 Putative uncharacterized protein (Fragment) | 134 | 4e-006 |
| B4FA24 Putative uncharacterized protein | 132 | 6e-006 |
| B6SSK6 Nucleolar RNA helicase 2 | 132 | 6e-006 |
| B7EBF8 cDNA clone:J013043E01, full insert sequence | 131 | 8e-006 |
| B8AMQ6 Putative uncharacterized protein | 131 | 8e-006 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G16563.1 aspartyl protease family protein | 185 | 3e-014 |
| AT5G26742.1 emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding | 147 | 7e-010 |
| AT5G26742.2 emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding | 147 | 7e-010 |
| AT3G21140.1 FMN binding | 123 | 4e-007 |
| AT1G51560.1 FMN binding | 113 | 6e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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