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Information for unigene UN83855
| FASTA Sequence |
| Unigene ID: UN83855 | Length: 807 |
SSR | | TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGTAAACTCTCAACAATGTTGCTCCGTCGTGCAACCGCCGTACTACCCAAA
ACCCTACAAAACCTCCGGCTATACTCCCCGGCAGCCACCTCCGCTATACCCCTAGAACACACCCAACTAGACTACCTCCCTGGATT
CCCTCGACCCGATCCGAAGCACGCGGAGACGATCCTAGCCGTTCCGCGGTCAGATTCCGGCAAGAACATATCGGCGAAAGAGCGTA
AAGCGGGACGAGTCCCTTCGATCATATTCGAGCAGGAGGATGGGCAGCACGGGGGAAACAAGAGGCTCGTCTCGGTTCAGACGAAT
CAGATCAGGAAGCTCGTCACTCACATGGGTTACTCTTTCTTCCTCTCTAGGGTTTTCGATGTCGAGGTTCGGTCTGAGATAGGTTC
CGATGAGGTCGTTGAGAAAGTCAGGGCCTTGCCTAGATCGATTCATTTGCACTCGGGAAGTGATGCACCGCTGAATGTAACGTTCA
TAAGAGCGCCTCCTGGTACTTTGTTGAAGGTTGATATCCCTCTTGTCTTCATCGGAGATGATGTTTCTCCTGGTTTAAAGAAAGGA
GCATCTCTGAATACGATCAAAAGAACAGTGAAATTCCTATGTCCGGCTGAGATAATCCCTCCATATATAGAAGTAGACCTCAGCCA
CTTGGACGTTGGACAAAAGCTAGTAACCGGAGACCTCAAGGTTCATCCAGCGCTAAAGCTTATAAAGTCCAAAGACGAACCGGTTG
TTAAGATCGCCGGAGGACGTGTCAGTGACCAGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ACC91264 50S ribosomal protein [Capsella rubella] | 1151 | 6e-124 |
| XP_002867699 hypothetical protein ARALYDRAFT_492505 [Arabidopsis lyrata subsp. lyrata] | 1149 | 1e-123 |
| NP_194093 ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain-containing protein [Arabidopsis thaliana] | 1140 | 1e-122 |
| CBI17602 unnamed protein product [Vitis vinifera] | 915 | 1e-096 |
| XP_002272347 PREDICTED: hypothetical protein [Vitis vinifera] | 913 | 2e-096 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q4FPH0 50S ribosomal protein L25 | 202 | 3e-015 |
| B2IG64 50S ribosomal protein L25 | 201 | 4e-015 |
| Q11GC6 50S ribosomal protein L25 | 197 | 1e-014 |
| A8HS67 50S ribosomal protein L25 | 195 | 2e-014 |
| Q2G6G9 50S ribosomal protein L25 | 191 | 6e-014 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B2WS92 50S ribosomal protein | 1151 | 4e-124 |
| Q9SUR4 Putative uncharacterized protein | 1140 | 8e-123 |
| A5A5A1 Ribosomal protein L25 | 862 | 1e-090 |
| B9RCJ6 50S ribosomal protein L25, putative | 829 | 9e-087 |
| B9GKC0 Predicted protein (Fragment) | 826 | 2e-086 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G23620.1 50S ribosomal protein-related | 1140 | 5e-125 |
| AT5G66860.1 INVOLVED IN: translation; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding (InterPro:IPR011035); BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT4G23620.1); Has 2346 Blast hits to 2345 proteins in 433 species: Archae - 0; Bacteria - 930; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). | 387 | 9e-038 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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