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Information for unigene UN83976
| FASTA Sequence |
| Unigene ID: UN83976 | Length: 874 |
SSR | | CTCTCTCTCCTTCTTCCCGTTTCCTCCATTAACACACAGAGAGCTCCAACAAGCTTCCTCCTTTATCTAAAGAGGAGAGAGAGAGA
GAGAGAGAGAGTTTCCAGATCGGATCGGATTTTGCAAGATGCAGACGGCAAACAACTGTCCAGATTCGTCGTCGGCGGCGGCGGCT
ACACCAGCCGGGACAACGCCACCTCCTCCCTCGCAACAACAACAACAACAGTGGCAACAACATCAACAATGGATGGCGGCTATGGC
TATGATGCAGCAGCAGCAACAGATGATGATGTATCCTCCTCACCACCAATACGCTCCTTACAACCAAGCTGCTGCTTATCCTCAGT
TTCAATACGCTCCTCCTTATCACCAGCAACAACAACAGAAGCGTGGTGGATCTAGTGGTGACGATGTGAAGACTCTCTGGATTGGT
GATCTTCTTCATTGGATGGACGAGACTTATCTCCACACCTGTTTCTCTCACACCAACCAGGTTTCCTCTGTGAAAGTGATACGAAA
CAAGCAAACTAGTCAGTCAGAAGGCTACGGTTTTGTCGAGTTCCTCTCACGTTCCGCAGCTGAGGAAGTTCTTCAGAGCTACAGCG
GCGTAACAATGCCTAACGCTGAGCAGCCCTTCCGTTTGAACTGGGCATCTTTCAGTACCGGCGAGAAGAGAGCTTCCGAAAACAAC
GGTCCTGATCTATCTTTATTCGTAGGAGATTTGGCTCCTGATGTGACTGATACTCTGCTGATGGAGACTTTTGCTGCGTACCAATC
TGTCAAAGGTGCAAAAGTTGTGATTGATTCCAACACCGGGCGTTCCAAAGGCTACGGGTTTGTCAGGTTTGGTGATGAGAGCGAGC
GGTCAAAGGCGCTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_175383 RNA-binding protein 47A [Arabidopsis thaliana] | 1016 | 3e-108 |
| AAG13046 Putative RNA binding protein [Arabidopsis thaliana] | 1016 | 3e-108 |
| BAB02953 DNA/RNA binding protein-like [Arabidopsis thaliana] | 888 | 2e-093 |
| NP_188544 RNA-binding protein 47B [Arabidopsis thaliana] | 888 | 2e-093 |
| XP_002885294 RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata] | 824 | 6e-086 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q01085 Nucleolysin TIAR | 196 | 2e-014 |
| P28644 28 kDa ribonucleoprotein, chloroplastic | 190 | 8e-014 |
| P31483 Nucleolysin TIA-1 isoform p40 | 186 | 2e-013 |
| P52912 Nucleolysin TIA-1 | 186 | 2e-013 |
| P70318 Nucleolysin TIAR | 171 | 1e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FX88 Putative RNA binding protein | 1016 | 2e-108 |
| Q0WW84 At3g19130 | 888 | 1e-093 |
| Q9LJL7 DNA/RNA binding protein-like | 888 | 1e-093 |
| Q8LFI9 Nuclear acid binding protein, putative | 791 | 3e-082 |
| B9HRX8 Predicted protein | 727 | 7e-075 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G49600.1 ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding | 1016 | 1e-110 |
| AT3G19130.1 ATRBP47B (RNA-binding protein 47B); RNA binding | 888 | 9e-096 |
| AT1G47490.2 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C); RNA binding | 620 | 1e-064 |
| AT1G47490.1 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C); RNA binding | 620 | 1e-064 |
| AT1G47500.1 ATRBP47C' (RNA-binding protein 47C'); RNA binding | 599 | 3e-062 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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