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Information for unigene UN84194
| FASTA Sequence |
| Unigene ID: UN84194 | Length: 756 |
SSR | | TAGAGTTTGGTCTCTCGATTCTCTTTTTGTCGAAGAAACAAAATGGGTTGGGATTTGTTCTTATGGATCCTCTCCTTCTTCGTCAG
CTTAGCCCTCGTCGCTTCCGTCTTCTATCAGGTCAACCCCTCCTTAATTTCAATCAAGTAGTGAGATTCTTGAATCCCAGATCTGT
CCTAAAGGTTTTCAATCTTTGAATGTCGGAATTGTTCACTTATTATTGTGATTTTTTTAGTTTGTCTGTAAGACTAGTTTGACCAG
CTATTTTGGTTCTGGACTAAGATGATTCTTCCTTAGTTTTGTTAAGTTTGCAAGTTATAGAGAGAGAGAGAGAGGAAGTGATGGAA
TGAGATATAAGTGTTGAGAGCTCTTCTTACTTAGCCTCTGTCAGTTTCCTTCTTCTGTTGATATGGGGCGATATATTTTTTTTTGT
GTGTGTGTGTGTAGGTTATATGTTTAACGGATTTAGAAGCTGATTACTTGAACCCTTTTGAAACATCATCTCGTATCAACCGATTG
ATACTACCTGAGTTTATCCTCCAAGCCTCACTCTGCATTCTCTTCCTCATCACTTGGCATTGGGTGTTTTTTCTAGTGGCTCTCCC
TGTAACATGCTATCACGCTATGCTGTAACTCTCTCTCTCTCCCTCCCTATCCATATTAGTAGTAGTTTCTTGAAACTAACATATTT
GAAAAACCTTCCTTTTTACTAAAAGATACAAAGAGCGGAGACATCTCATCGATGTCACTGAAGTGTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAB01968 unnamed protein product [Arabidopsis thaliana] | 298 | 4e-025 |
| NP_187825 protein cornichon-1 [Arabidopsis thaliana] | 298 | 4e-025 |
| XP_002882769 cornichon family protein [Arabidopsis lyrata subsp. lyrata] | 297 | 5e-025 |
| CAN64231 hypothetical protein VITISV_035789 [Vitis vinifera] | 257 | 2e-020 |
| XP_002282874 PREDICTED: hypothetical protein [Vitis vinifera] | 257 | 2e-020 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P53173 ER-derived vesicles protein ERV14 | 152 | 2e-009 |
| Q22361 Uncharacterized protein T09E8.3 | 150 | 3e-009 |
| P38312 ER-derived vesicles protein ERV15 | 147 | 6e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C7D7 At3g12180 | 298 | 3e-025 |
| Q9LH48 Genomic DNA, chromosome 3, BAC clone: T23B7 | 298 | 3e-025 |
| A5C5A1 Putative uncharacterized protein | 257 | 2e-020 |
| B9T7Q5 Cornichon, putative (Fragment) | 219 | 4e-016 |
| B9II35 Predicted protein | 208 | 8e-015 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G12180.1 cornichon family protein | 298 | 2e-027 |
| AT1G12390.1 cornichon family protein | 185 | 2e-014 |
| AT1G12340.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: cornichon family protein (TAIR:AT1G12390.1); Has 463 Blast hits to 463 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 110; Plants - 41; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). | 181 | 7e-014 |
| AT4G12090.1 cornichon family protein | 167 | 3e-012 |
| AT1G62880.1 cornichon family protein | 163 | 8e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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