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Information for unigene UN84489
| FASTA Sequence |
| Unigene ID: UN84489 | Length: 851 |
SSR | | CTCTCTCTCTCTCTCTACTCATTAGGGTTTGTCGAGATGGGAGCTGCTCACAGCCACGAAGATCTAGAGATCTGCGAATCAGACGA
AGAGGAATACGAAGAGTACGAAGAAGGCAGAGAACAACAAGAAGAACAAGAAGAAGACGAGTTCGTCGACTCCAGGGACGATACGT
TCGCGTCGTCATCTTCCTCTCGTCTCCGTCCCAAACCTCCTTCCTCATCCCTAGACGACGTCGAATCAAAGCTCAGAGCCTTAAAG
CTCAAATACCCCTCCTCAACCCAACCACCTCCCTCCACCCAATCCTCGATTAAGCTTTTCCGTTACATCAACGGAAACACCCCCAA
AGCCAAATGGATCACTGCCGAGAAGTCCACCTCTTACTCCTTCATCAAGACCTCCGACGAGGAGGATGATCAAGAAGACGAATCGG
AGAAGGAATGGTGGGTGCTGAAAGTCGGTAGGAGCAAGATCAGAGAAAAGGTCTCCGACGAGATGCAATTGAAAGCCTACAGAGAC
CAGCGCCGTGTCGATTTCGTCGCGAGAGGAGTCTGGGCGCTGAGATTCGCTACCCTCGAAGACTTCGCATCGTTCGCGAGCACTTA
CAACAGCTGCTTGTTCGAGAACAACCACGGAGTCGAGATGAACGAAGCGAGCAAAGCTAAGATCTTTGGGAAAGACTTCATCGGGT
GGGCGAACCCGGAAGCTGCCGACGACTCCATGTGGGAAGACGCCGACGACATACTGCTTCAGAGCCCGGTGAGAGACACGCAGGAT
CTCACGGAGGCTTTCGAGGAAGCGACGAGCGAAGGGATACATAGTTTAGCTCTAGGCGCGTTGGATAATAGTTTCTT
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_195066 Vacuolar import/degradation, Vid27-related protein [Arabidopsis thaliana] | 1056 | 7e-113 |
| XP_002867183 hypothetical protein ARALYDRAFT_491350 [Arabidopsis lyrata subsp. lyrata] | 1036 | 1e-110 |
| XP_002327137 predicted protein [Populus trichocarpa] | 725 | 2e-074 |
| CAA73973 dem [Solanum lycopersicum] | 659 | 7e-067 |
| XP_002313117 predicted protein [Populus trichocarpa] | 637 | 3e-064 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G33400.1 dem protein-related / defective embryo and meristems protein-related | 1056 | 3e-115 |
| AT3G19240.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Vacuolar import and degradation, Vid27-related (InterPro:IPR013863); BEST Arabidopsis thaliana protein match is: dem protein-related / defective embryo and meristems protein-related (TAIR:AT4G33400.1); Has 206 Blast hits to 202 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 117; Plants - 38; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). | 638 | 8e-067 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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